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The map label for this gene is agmR [H]

Identifier: 74318588

GI number: 74318588

Start: 2643729

End: 2644403

Strand: Direct

Name: agmR [H]

Synonym: Tbd_2570

Alternate gene names: 74318588

Gene position: 2643729-2644403 (Clockwise)

Preceding gene: 74318587

Following gene: 74318589

Centisome position: 90.86

GC content: 67.7

Gene sequence:

>675_bases
ATGCCCCTGTCATCATGCAGGAGCGCGCAGTTGAAAACCCTGTTGGCCGACGACCACCCGCTCATGCGCGAGGGCGTGCG
CCAGGTTCTGTCGCAGCTCGAGCCGCCGGTCGAAATCATCGACGCGCACGACTACCCGAGTCTGTTCGCGCAGACCGCCT
TGCATGCCGATCTCGACCTCGCCGTCGTCGACCTCAACATGCCCGGCTTCGTCGGCGTGCAAGGCATCAGCCAGTTCCGC
GCGCGCTTCCCGGACGTGCCGCTGGTCGTGCTTTCCGCATCCGAGTCCTCGCACGACATCCGCAGCGTGCTCGAAGCCGG
CGCGCTCGGCTACATCCCCAAGGCGGCGTCGAGCGCGACCATGCTCGCGGCGCTGCAGCAAGTACTCGCCGGCGATATCT
ACATCCCGACATGTCCGCCCGCCGTGCGTGAAGACGGCCCGCGCGGCGCACGCACGGCCGATTTCGACGCGCTGCAGCAC
AGCGGGCTCACCGCGCGCCAGCTCGAGGTCGCCCGCCTGCTCGCGCAGGGCTGCGCGAACAAGGCCATCGCGGGAAGCCT
CGCCATGTCCGAAAGCACGGTCAAGGTGCACATCGCGGCGATTTTTCGTGCCTTGAGCGTCACCAACCGCACCGAAGCCG
TGCTGGCGATCCAGCGCCTCACGCAAGGCTCGTGA

Upstream 100 bases:

>100_bases
CTATTTCGGCTATCTCGAAAACGCGATCGACGAGGGCGTGCGCAAGGTGCGGGGCAAGTAGCCGCACGCACCCGCAAAGC
CCAGGGGCTGGCGTACACTA

Downstream 100 bases:

>100_bases
CCCGACTGGGCGCCCTGCTGCGTCGACTCTCGGTCTCGAGCATCCGCAGCCGGATGCTCGTGGTCGCGCTGCTGCCCGCA
CTGCTCGCCGAATTCGGCAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPLSSCRSAQLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQTALHADLDLAVVDLNMPGFVGVQGISQFR
ARFPDVPLVVLSASESSHDIRSVLEAGALGYIPKAASSATMLAALQQVLAGDIYIPTCPPAVREDGPRGARTADFDALQH
SGLTARQLEVARLLAQGCANKAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAVLAIQRLTQGS

Sequences:

>Translated_224_residues
MPLSSCRSAQLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQTALHADLDLAVVDLNMPGFVGVQGISQFR
ARFPDVPLVVLSASESSHDIRSVLEAGALGYIPKAASSATMLAALQQVLAGDIYIPTCPPAVREDGPRGARTADFDALQH
SGLTARQLEVARLLAQGCANKAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAVLAIQRLTQGS
>Mature_223_residues
PLSSCRSAQLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQTALHADLDLAVVDLNMPGFVGVQGISQFRA
RFPDVPLVVLSASESSHDIRSVLEAGALGYIPKAASSATMLAALQQVLAGDIYIPTCPPAVREDGPRGARTADFDALQHS
GLTARQLEVARLLAQGCANKAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAVLAIQRLTQGS

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=35.7487922705314, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790102, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789937, Length=208, Percent_Identity=23.5576923076923, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786747, Length=201, Percent_Identity=22.3880597014925, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788222, Length=205, Percent_Identity=22.4390243902439, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23758; Mature: 23626

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSSCRSAQLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQTALHADLDL
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCE
AVVDLNMPGFVGVQGISQFRARFPDVPLVVLSASESSHDIRSVLEAGALGYIPKAASSAT
EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHH
MLAALQQVLAGDIYIPTCPPAVREDGPRGARTADFDALQHSGLTARQLEVARLLAQGCAN
HHHHHHHHHHCCEECCCCCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
KAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAVLAIQRLTQGS
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLSSCRSAQLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQTALHADLDL
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCE
AVVDLNMPGFVGVQGISQFRARFPDVPLVVLSASESSHDIRSVLEAGALGYIPKAASSAT
EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHH
MLAALQQVLAGDIYIPTCPPAVREDGPRGARTADFDALQHSGLTARQLEVARLLAQGCAN
HHHHHHHHHHCCEECCCCCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
KAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAVLAIQRLTQGS
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]