Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318556

Identifier: 74318556

GI number: 74318556

Start: 2608540

End: 2609433

Strand: Direct

Name: 74318556

Synonym: Tbd_2538

Alternate gene names: NA

Gene position: 2608540-2609433 (Clockwise)

Preceding gene: 74318555

Following gene: 74318557

Centisome position: 89.65

GC content: 70.69

Gene sequence:

>894_bases
ATGAAACGACTGCTTCTTGCGCTCGCCCTGTGGCTGCCCGTCGCCGCCTACGCGAGCCTCAACGTCTTCGCCTGCGAGCC
CGAGTGGGCCGCGCTGGCGAGGGAAATCGGCGGCGACGACGTCAAGGTCTACGCCGCGACGACCGCGACCCAGGACCCGC
ACCGAATCGAGGCGCGGCCGAGCCTGATCGCGCAAATGCGGCGCGCCGACCTCGCGGTGTGTACGGGAGCCGAACTCGAA
ATCGGCTGGCTGCCGGTATTGCTGCGCGAGTCCGGAAACGCCCGCGTCCAGCCCGGGCGGCCCGGCTACTTCGAGGCCGC
ACGTTTGGTTCCCCTGCTCGACAAGCCGCGCCGGCTCGATCGCGCCGAGGGCGACGTGCATGCGCTCGGCAATCCGCACA
TCCACACCGACCCGCGCAACATCCTGCGCGTCGCCGAGTCGCTGACGGCGCGCATGGCCGAGCTCGATCCCACCAAGGCC
GCGGCTTACCGCGCGCGAGGGCAGGCCTTCGGCACGCGCTGGCAGGCCGCGATCGCGCGCTGGGAAGCGCGCGCCGCCAC
GCTAAAGAGTGTCCCGGTCGCGGTTCAGCACAAGTCGTTCAGCTACCTGCTCGCCTGGCTCGGACTGCGCGAGGTCGCCA
TCCTGGAGCCCAAGCCGGGGGTCGACCCGTCGGTCGCCCATCTCGCGCGCGTGGCGGCGCAGCTCGAAACGACCCCGGCG
CGGATGGTGCTGCGAACCGCCTATCAGAGTCCGCGTCCGGCGGCCTGGCTCGCCGACCGCGCAGGCATTCCGGCGCTCGC
CTTGCCGTATACCGTGGGCGGCAACGCGCAGGCGAAGGATTTGTTCGCGCTCTTCGACGACACGCTGGACCAGCTGCTGA
AGGCGGCACGATGA

Upstream 100 bases:

>100_bases
AAGGACCAGTCGATGGCCGAGGTAAGCGAGAACCAGTGGTTCGTGCAATACATCCACAGTCTGGGCGCGCACGGCGCTCA
CAAATTCTGAGGAGACCGCC

Downstream 100 bases:

>100_bases
ACGCGGCGTTCGCCCCCGACCTGCTGGCCTGGCCCTTCGCGGTCGGGCTGCTGGTGCTCGCGACCCACGTCCCGCTCGGG
CGGCGGGTGCTCGCGCGCGG

Product: zinc/manganese transport system substrate-binding protein

Products: NA

Alternate protein names: ABC Transporter Periplasmic Adhesin; BC-Type Metal Ion Transport System Periplasmic Component.

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE
IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA
AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA
RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR

Sequences:

>Translated_297_residues
MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE
IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA
AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA
RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR
>Mature_297_residues
MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE
IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA
AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA
RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR

Specific function: Unknown

COG id: COG0803

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32390; Mature: 32390

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARP
CHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH
SLIAQMRRADLAVCTGAELEIGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLD
HHHHHHHHHCEEEECCCCEEECCEEEEEECCCCCEECCCCCCHHHHHHHCHHCCCCCHHH
RAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKAAAYRARGQAFGTRWQAAIAR
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
WEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA
HHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCHH
RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR
HHHHHHHHCCCCCCHHHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARP
CHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH
SLIAQMRRADLAVCTGAELEIGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLD
HHHHHHHHHCEEEECCCCEEECCEEEEEECCCCCEECCCCCCHHHHHHHCHHCCCCCHHH
RAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKAAAYRARGQAFGTRWQAAIAR
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
WEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA
HHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCHH
RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR
HHHHHHHHCCCCCCHHHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA