Click here to switch to the map view.

The map label for this gene is yjiA [H]

Identifier: 74318552

GI number: 74318552

Start: 2605545

End: 2606594

Strand: Direct

Name: yjiA [H]

Synonym: Tbd_2534

Alternate gene names: 74318552

Gene position: 2605545-2606594 (Clockwise)

Preceding gene: 74318551

Following gene: 74318553

Centisome position: 89.54

GC content: 68.86

Gene sequence:

>1050_bases
GTGATCCCGCCAGAACCCATTCCCGTCACCCTGCTCACCGGTTTCCTCGGCAGCGGCAAGACCACGGTGCTCAACCAGAT
CGTGCGCCAGCTGCCGCGCACGGCGATCCTGATGAACGAGTTCGGCGAAGTCGCACTCGACCACCAACTGCTGCAGGAGA
TGGAGGGGCCGCTGGCCCTGCTATCCGGCGGCTGCGTCTGCTGCACGATCTCGGGCAGCCTGTCGCCGACGCTGAAGAAT
CTCTGGATGGCGCGCGACCGCGGCGACATCCCGGCCTTCGAGCGGGTCGTCATCGAGACGACCGGCATCGCCGACCCGGT
GCCGGTGCTCGACAACCTGCTGCACGACAACTGGGTGCGCGCGCGCTTTCGCCTCGACGGCGTCGTCGCCACGGTCGACG
CGCTGGTCGGCATGGGCCAGCTCGACGAACACGCCGAGGCGGTCAAGCAGGTCGCGGTCGCCGACCGGCTGCTGCTGACC
AAAACCGACCTCGCGCCGGCCGCGACGACCGCCGCGCTCCGCGAAAGGCTGGCGGCGCTCAACCCGGCGGCCGACATCCT
GACGGTGACGCACGGCGCGCTCGATCCGGCGGCGATCCAGAACCTCGGCTTGTGGAACGCCGCGACGCGAACGCTCGAAG
TCGCACGCTGGCTGAAGCCCGAGCGCTACCGGCAGGCCGTCGCCGGGCGACTCGGCGGCAAGCCGCGGACGGCACTGCAC
GACAGTCGGATCGAGGCGTTTTCGGTGCTGATCGACACGCCGCTCGATCGCTACGGCCTGCAGTCGGCGCTGTCGATGCT
GACCGCATTTCGCGCCGAGAATCTGCTCCGCTTCAAGGCGATCGTGAACCTCAAGGGCGAAGCGCTGCCGGTCGTGCTCC
ACGGCGTCCAGCACGTGCTCTATCCGGAAGTCCAGCTCGACGCCTGGCCCGACGACGACCGCCGCAGCCGCTTCGTCTTC
ATCGTGCGCGATCTCGAACCGCAGTTCGTCGCCAAGCTGTTGGCCGATTTCTCCGGTGCCGCCCGGATTCCGGACCCTGC
GACGCCGTGA

Upstream 100 bases:

>100_bases
GCACGAACGCAAGGAAAAGCTGCACGCCTGACGCGCGCCCCTCTCGTCCGGGCGCCGTTCAGGCCGGCGCTCGGCCGCCC
CGCCGACATCCGCTTCCGCC

Downstream 100 bases:

>100_bases
ACTTGGCGCAGAAATGCCTCGTCGGCGCGATCCGCGTCTACCAGCTCGCGCTCTCGCCCTGGCTGGGTCGGCAGTGCCGC
TACCTGCCGACCTGCTCGGA

Product: cobW protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MIPPEPIPVTLLTGFLGSGKTTVLNQIVRQLPRTAILMNEFGEVALDHQLLQEMEGPLALLSGGCVCCTISGSLSPTLKN
LWMARDRGDIPAFERVVIETTGIADPVPVLDNLLHDNWVRARFRLDGVVATVDALVGMGQLDEHAEAVKQVAVADRLLLT
KTDLAPAATTAALRERLAALNPAADILTVTHGALDPAAIQNLGLWNAATRTLEVARWLKPERYRQAVAGRLGGKPRTALH
DSRIEAFSVLIDTPLDRYGLQSALSMLTAFRAENLLRFKAIVNLKGEALPVVLHGVQHVLYPEVQLDAWPDDDRRSRFVF
IVRDLEPQFVAKLLADFSGAARIPDPATP

Sequences:

>Translated_349_residues
MIPPEPIPVTLLTGFLGSGKTTVLNQIVRQLPRTAILMNEFGEVALDHQLLQEMEGPLALLSGGCVCCTISGSLSPTLKN
LWMARDRGDIPAFERVVIETTGIADPVPVLDNLLHDNWVRARFRLDGVVATVDALVGMGQLDEHAEAVKQVAVADRLLLT
KTDLAPAATTAALRERLAALNPAADILTVTHGALDPAAIQNLGLWNAATRTLEVARWLKPERYRQAVAGRLGGKPRTALH
DSRIEAFSVLIDTPLDRYGLQSALSMLTAFRAENLLRFKAIVNLKGEALPVVLHGVQHVLYPEVQLDAWPDDDRRSRFVF
IVRDLEPQFVAKLLADFSGAARIPDPATP
>Mature_349_residues
MIPPEPIPVTLLTGFLGSGKTTVLNQIVRQLPRTAILMNEFGEVALDHQLLQEMEGPLALLSGGCVCCTISGSLSPTLKN
LWMARDRGDIPAFERVVIETTGIADPVPVLDNLLHDNWVRARFRLDGVVATVDALVGMGQLDEHAEAVKQVAVADRLLLT
KTDLAPAATTAALRERLAALNPAADILTVTHGALDPAAIQNLGLWNAATRTLEVARWLKPERYRQAVAGRLGGKPRTALH
DSRIEAFSVLIDTPLDRYGLQSALSMLTAFRAENLLRFKAIVNLKGEALPVVLHGVQHVLYPEVQLDAWPDDDRRSRFVF
IVRDLEPQFVAKLLADFSGAARIPDPATP

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=353, Percent_Identity=28.328611898017, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI33469141, Length=353, Percent_Identity=28.0453257790368, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI146231952, Length=355, Percent_Identity=28.7323943661972, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI223941779, Length=347, Percent_Identity=28.5302593659942, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI148727351, Length=353, Percent_Identity=28.0453257790368, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI223941776, Length=342, Percent_Identity=27.1929824561404, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI119120938, Length=144, Percent_Identity=35.4166666666667, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082430, Length=322, Percent_Identity=37.5776397515528, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1788499, Length=197, Percent_Identity=31.4720812182741, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324356, Length=222, Percent_Identity=26.5765765765766, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 38020; Mature: 38020

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPEPIPVTLLTGFLGSGKTTVLNQIVRQLPRTAILMNEFGEVALDHQLLQEMEGPLAL
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LSGGCVCCTISGSLSPTLKNLWMARDRGDIPAFERVVIETTGIADPVPVLDNLLHDNWVR
CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHEEEEECCCCCCHHHHHHHHHCCHHH
ARFRLDGVVATVDALVGMGQLDEHAEAVKQVAVADRLLLTKTDLAPAATTAALRERLAAL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHC
NPAADILTVTHGALDPAAIQNLGLWNAATRTLEVARWLKPERYRQAVAGRLGGKPRTALH
CCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
DSRIEAFSVLIDTPLDRYGLQSALSMLTAFRAENLLRFKAIVNLKGEALPVVLHGVQHVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YPEVQLDAWPDDDRRSRFVFIVRDLEPQFVAKLLADFSGAARIPDPATP
CCCEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIPPEPIPVTLLTGFLGSGKTTVLNQIVRQLPRTAILMNEFGEVALDHQLLQEMEGPLAL
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LSGGCVCCTISGSLSPTLKNLWMARDRGDIPAFERVVIETTGIADPVPVLDNLLHDNWVR
CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHEEEEECCCCCCHHHHHHHHHCCHHH
ARFRLDGVVATVDALVGMGQLDEHAEAVKQVAVADRLLLTKTDLAPAATTAALRERLAAL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHC
NPAADILTVTHGALDPAAIQNLGLWNAATRTLEVARWLKPERYRQAVAGRLGGKPRTALH
CCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
DSRIEAFSVLIDTPLDRYGLQSALSMLTAFRAENLLRFKAIVNLKGEALPVVLHGVQHVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YPEVQLDAWPDDDRRSRFVFIVRDLEPQFVAKLLADFSGAARIPDPATP
CCCEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]