Click here to switch to the map view.

The map label for this gene is yrdA [H]

Identifier: 74318450

GI number: 74318450

Start: 2502362

End: 2502931

Strand: Reverse

Name: yrdA [H]

Synonym: Tbd_2432

Alternate gene names: 74318450

Gene position: 2502931-2502362 (Counterclockwise)

Preceding gene: 74318454

Following gene: 74318449

Centisome position: 86.02

GC content: 67.19

Gene sequence:

>570_bases
ATGACCGACAAGGTTTACGATTCCGCGCTCGCGCCGCATCACGGCGTCATGCCGACGCTCGCCACGGGCGCCTGGGTGCA
TCCGCGCGCGAGCGTGATCGGCGAGGTCAGCCTCGGTCGCGACGCGTCGATCTGGCCGGGCGCGGTGATCCGTGGCGACG
TCAATGCGATCGCCATCGGCGAGGCGACCAACATCCAGGACAACAGCGTGCTCCACGTCTCGCACAAGACGCGGGACAAC
CCGGCCGGCGGGCCGCTCGTCATCGGCGCCGGGGTCACGGTCGGGCACTCGGTGATCCTGCACGCCTGCACGATCGAGGA
CGAATGCCTGATCGGCATGGGCTCGATCATCCTCGACCGCGCGGTCGTGCAGAAGCACGTGCTGCTCGGCGCCGGTTCGC
TGGTGCCCGAAGGCAAGGTGCTCGAATCCGGCCATCTCTACCTCGGCCGCCCGGCCAAGATGGTGCGGCCGCTGACCGAT
GAGGAAATCGCCTATTTCAGCTATTCCGCGCAGCACTATGTGGCACTCGCGCGGTCGTACCAAGACGCTTCGTCCCCGGA
ATCGCCATGA

Upstream 100 bases:

>100_bases
CGAGCAGGGGGTTGGAGCCCTTGGGGGTATTCATGGCGACGACCATTAGTGGGGAGTTAGGGGAATTATAATTTCGGCTG
TCTTCCCCGTTTTCAACCCC

Downstream 100 bases:

>100_bases
AATTCGCAAAACCCGTTCTTTTCCTTGTCGCCGCGCTCGCCATCGTCGCCGCGCTGGCCTACGCACTCGTCGACAAGCCG
ACCGCGCCCGCGTCGACCTT

Product: carbonic anhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTDKVYDSALAPHHGVMPTLATGAWVHPRASVIGEVSLGRDASIWPGAVIRGDVNAIAIGEATNIQDNSVLHVSHKTRDN
PAGGPLVIGAGVTVGHSVILHACTIEDECLIGMGSIILDRAVVQKHVLLGAGSLVPEGKVLESGHLYLGRPAKMVRPLTD
EEIAYFSYSAQHYVALARSYQDASSPESP

Sequences:

>Translated_189_residues
MTDKVYDSALAPHHGVMPTLATGAWVHPRASVIGEVSLGRDASIWPGAVIRGDVNAIAIGEATNIQDNSVLHVSHKTRDN
PAGGPLVIGAGVTVGHSVILHACTIEDECLIGMGSIILDRAVVQKHVLLGAGSLVPEGKVLESGHLYLGRPAKMVRPLTD
EEIAYFSYSAQHYVALARSYQDASSPESP
>Mature_188_residues
TDKVYDSALAPHHGVMPTLATGAWVHPRASVIGEVSLGRDASIWPGAVIRGDVNAIAIGEATNIQDNSVLHVSHKTRDNP
AGGPLVIGAGVTVGHSVILHACTIEDECLIGMGSIILDRAVVQKHVLLGAGSLVPEGKVLESGHLYLGRPAKMVRPLTDE
EIAYFSYSAQHYVALARSYQDASSPESP

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=182, Percent_Identity=51.0989010989011, Blast_Score=190, Evalue=5e-50,
Organism=Escherichia coli, GI1787667, Length=162, Percent_Identity=33.9506172839506, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87081681, Length=162, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19903; Mature: 19772

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKVYDSALAPHHGVMPTLATGAWVHPRASVIGEVSLGRDASIWPGAVIRGDVNAIAIG
CCCCCCHHHCCCCCCCCCHHCCCCEECCCHHHEEEECCCCCCCCCCCEEEECCCCEEEEC
EATNIQDNSVLHVSHKTRDNPAGGPLVIGAGVTVGHSVILHACTIEDECLIGMGSIILDR
CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHCCEEEEEEECCCCCHHEEHHHHHHHH
AVVQKHVLLGAGSLVPEGKVLESGHLYLGRPAKMVRPLTDEEIAYFSYSAQHYVALARSY
HHHHHHHHCCCCCCCCCCCEEECCCEEECCCHHHHCCCCCCCEEEEEECCHHHHHHHHHH
QDASSPESP
CCCCCCCCC
>Mature Secondary Structure 
TDKVYDSALAPHHGVMPTLATGAWVHPRASVIGEVSLGRDASIWPGAVIRGDVNAIAIG
CCCCCHHHCCCCCCCCCHHCCCCEECCCHHHEEEECCCCCCCCCCCEEEECCCCEEEEC
EATNIQDNSVLHVSHKTRDNPAGGPLVIGAGVTVGHSVILHACTIEDECLIGMGSIILDR
CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHCCEEEEEEECCCCCHHEEHHHHHHHH
AVVQKHVLLGAGSLVPEGKVLESGHLYLGRPAKMVRPLTDEEIAYFSYSAQHYVALARSY
HHHHHHHHCCCCCCCCCCCEEECCCEEECCCHHHHCCCCCCCEEEEEECCHHHHHHHHHH
QDASSPESP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]