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The map label for this gene is yggS [C]

Identifier: 74318436

GI number: 74318436

Start: 2489299

End: 2490039

Strand: Reverse

Name: yggS [C]

Synonym: Tbd_2418

Alternate gene names: 74318436

Gene position: 2490039-2489299 (Counterclockwise)

Preceding gene: 74318439

Following gene: 74318435

Centisome position: 85.57

GC content: 69.23

Gene sequence:

>741_bases
ATGAATAACGGCCCGTTTCCGTCCGAACTTGAGCCTGCAGCGGGGCCGGGAGCCGACTCGGCGACGGCGCGTCTGCAGGG
CGTGCGCGGCCGGATCGCCGCCGCTGCGGCGCGTGCCGGTCGCGATCCGGCGAGCGTCGAACTGCTCGCGGTGAGTAAGG
CCTTCGGCGCGGCCGCGGTGCGCGCGCTGGCCGGGGCAGGACAGCGCGCCTTCGGCGAAAACTACCTGCAGGAGGCGCTC
GTCAAGCAGGCGGCGCTGGCCGATCTCGCCCTCGACTGGCATTTCATCGGTCCGATCCAGAGCAACAAGACGCGACCGAT
CGCCGAGAATTTCGGCTGGGTGCACAGCGTCGACCGGCTGAAGATCGCCCAGCGGCTGTCGGCGCAGCGGCCGCTTGGGC
TGCCGCCGCTCAACGTCTGCATCGAGGTCAACGTCAGCGGCGAGGCGAGCAAAGGCGGTGCGAGCCCCGACGCGCTGCCC
GAGCTGGTCGAGGCCGTGGCGAGGCTTCCGGGTCTGCGCCTGCGCGGGATGATGACGATTCCCGCGCCGACCCACGATTT
TGATGCGCAGCGGGCCGCGTTCCGGCGACTGCGCGAATTGTTCGACGGACTGCGCGAACGCCATGCGCTCGACACCATGT
CGATGGGTATGTCGGCGGATCTCGAGGCGGCGATTCTGGAGGGCGCGACGATCGTTCGCGTCGGCACCGCCCTGTTTGGC
GAAAGGAAATACCCGAGGTGA

Upstream 100 bases:

>100_bases
GTCGGAAGCCTTGTTTTTGACGGCGAAAGCGAGCAATTCAGAAATATCCACGCGTGCCTCGTGCAGTATGGGGGTGGGGT
TTTGACCGATAATAAACGCC

Downstream 100 bases:

>100_bases
AACATGCATAAAGTCAGCTTCATCGGCGGCGGCAACGTGGCCGCCGCGATCATCGGCGGCCTCGTCGCGAGCGGCACCGC
GCCGACCGATATCGAGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNNGPFPSELEPAAGPGADSATARLQGVRGRIAAAAARAGRDPASVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEAL
VKQAALADLALDWHFIGPIQSNKTRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALP
ELVEAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEAAILEGATIVRVGTALFG
ERKYPR

Sequences:

>Translated_246_residues
MNNGPFPSELEPAAGPGADSATARLQGVRGRIAAAAARAGRDPASVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEAL
VKQAALADLALDWHFIGPIQSNKTRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALP
ELVEAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEAAILEGATIVRVGTALFG
ERKYPR
>Mature_246_residues
MNNGPFPSELEPAAGPGADSATARLQGVRGRIAAAAARAGRDPASVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEAL
VKQAALADLALDWHFIGPIQSNKTRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALP
ELVEAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEAAILEGATIVRVGTALFG
ERKYPR

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=36.1344537815126, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=52.212389380531, Blast_Score=229, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17533025, Length=229, Percent_Identity=37.9912663755458, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=235, Percent_Identity=33.1914893617021, Blast_Score=112, Evalue=8e-26,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=39.3364928909953, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26076; Mature: 26076

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGPFPSELEPAAGPGADSATARLQGVRGRIAAAAARAGRDPASVELLAVSKAFGAAAV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHH
RALAGAGQRAFGENYLQEALVKQAALADLALDWHFIGPIQSNKTRPIAENFGWVHSVDRL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHCCHHHHHHHH
KIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALPELVEAVARLPGLRLRGMMTI
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCEEEC
PAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEAAILEGATIVRVGTALFG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHC
ERKYPR
CCCCCC
>Mature Secondary Structure
MNNGPFPSELEPAAGPGADSATARLQGVRGRIAAAAARAGRDPASVELLAVSKAFGAAAV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHH
RALAGAGQRAFGENYLQEALVKQAALADLALDWHFIGPIQSNKTRPIAENFGWVHSVDRL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHCCHHHHHHHH
KIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALPELVEAVARLPGLRLRGMMTI
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCEEEC
PAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEAAILEGATIVRVGTALFG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHC
ERKYPR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]