| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318433
Identifier: 74318433
GI number: 74318433
Start: 2485796
End: 2487742
Strand: Reverse
Name: 74318433
Synonym: Tbd_2415
Alternate gene names: NA
Gene position: 2487742-2485796 (Counterclockwise)
Preceding gene: 74318434
Following gene: 74318425
Centisome position: 85.5
GC content: 66.87
Gene sequence:
>1947_bases GTGGGAGGCCCCGGGGACGATGAGCGAAAACAACAGCAGACCATGAGCATCCATCTCGAACAGGAGGTCGCCGGCTACAG CGCGCGGCGCATGCGGCTCGCCTCGGCGATCACGGACTACGCCGACTGGCTCGACCGTCAGCATGGTATCGACGCCGAGC GCACGCTGCGGCTCGCGGACACGGCCAGTGCGCTGCGCCGCGACAAGCTCGTCGTCGCCTTCGTCGCCGAGTTCTCGCGC GGCAAGACCGAGCTCATCAACGCGCTGTTTTTCGCCGATCACGGCCAGCGCCTGCTGCCCTCGGACGCGGGGCGCACGAC GATGTGCCCGACCGAACTCTTCGCGAGCGAGGACGAGCCGCCGAGTCTGTCGCTGCTGCCGATCGAGACCCGGCGGCGCA GCGAATCGCTCGCCCGGCTCAAGCACCAGCCGATCGAATGGTCGCGCGTGCTGCTCGATCCGAACGATCCCCGGCAGTTG CAGGAGAGCCTCCGGAAGCTGACCGAAACCAAGACGATTCCGGCGGCCGATGCGGTCGAACTCGGGCTGTGGGACAGCGA GGATGCGAGCGAGCGCCATCAGCTGCGGGCCGACGGCACGGTCGAGGTGCCGGCCTGGCGCTACGCGCTGGTCAATTTCC CGCATCCGCTGCTGCAGGCGGGCCTGACGGTGCTCGATACGCCGGGCCTGAATGCGCTCGGCGCCGAGCCCGAACTGACG CTCTCGGTCATTCCGAACGCCCACGCCGTGATCTACCTGCTCGCGACCGATTCCGGCGTCACGCGGTCCGACCTCGAGAT CTGGCAGAAATACGTGCACCGCCACGCCAACTACCACGTCGCGGTCCTCAACAAGATCGACATGCTGTGGGACGAGCTCA AGAGCGACGCCGAGGTGCAGGCGACGATCGAACGCCAGGCCGAGGAGACGGCGCGTGTGCTGAAGCTGCCGCGCAGCCGC GTGTTTGCCGTCTCGGCACAGAAGGCACTGAGCGCGACGATCCGCGGCGACGCCGCGGTGCGCGCCCGCTCGGGCATCGA GTCGCTCGAATATCTGCTCGCGCACCAGGTCATCCCGGCGCGGCGCGACATGCTCTTCAATGCGGTCAACCGCGAGGTGA ACGCGCTGCTCGACGAGAGCCGGGTCGACCTCGCGGCGCGCCTCAAGCAGTACAGCGACGAGCTCATCCTGCTGACCCAG CTGTCGGGCAAGAATCGCGAGCTGATCGAGCAGACGCGGGCGACGCTGCAGAAGGAAAAGGACGCGTACGACGCGACGGC TGAGCAGTTCCGCACGACCCGCAGGATGGTGCAGAGCCAGGGCGAGCAACTGCTCGCGCAACTGTCCGACGAGACGCTCG ACGGTATTCTGAAGGCAGGGCGCGCCGCACTCGAGGACAGCTGGACGACGCGCGGGCTCACCAACGGGATCCGCGAGCTG AGCGACGGCATGGGCAAGCGCCTGCAGCAGGCGACGCAACTCTCCGACAACATGCTCGCTGCGCTGGAAAAGGCCTACGC CCGCTTCCATCGCCATCATCGCCTGCCGAAAATGCAGGTGCCGCGTCTCGATCTGTCCGCCTACCGCAACCGGCTCGACG TGCTGATACGCGAAACCGAGGTCTTTTGCACCGATCCCGCGAACTTGCTGCTGGAAAAGCGCTTCATGATCCGGCGCTTC TATGCCGGCCTTGCCGAAGAGGTGCGCCAGGCTTTCAAGCTCGCCCGCACCGAGGCCGAGCGCTGGCTACGCATCGCACT CGACCCGTTGATGACGCGTATCCGCGAGCACAAGCACTTTCTCGACGCGCGCCTCGCGAACCTGCAGCGCATCCTCGAGA ACATGGGCACGCTGCACGGCCGCATGGCGCAGATCAAGGACGAGATCAATCAGCTGCGTCAGGACAAGGCCGAGCTCGTG CGCATCGCCGGCGACCTCGCGGCCTAG
Upstream 100 bases:
>100_bases AAGTGCGGATGCGCGCTGCCGCGCGCCAGTGCCGCCGGCTCGGGCCGCGCTCGACGCGGGCGCGGGGCCGTCGCGGCGAA GACCGAGCGGCGGGGTGGGG
Downstream 100 bases:
>100_bases CGGCCCGCGGCTCAGCCGTTGAGGCGGCCGAGCAGCGTCAGCGTGCGGTCGGGATCGGTGTTCTTCAGCAGCCGCTGGGT CAGCGCCGGGAGCTCGGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MGGPGDDERKQQQTMSIHLEQEVAGYSARRMRLASAITDYADWLDRQHGIDAERTLRLADTASALRRDKLVVAFVAEFSR GKTELINALFFADHGQRLLPSDAGRTTMCPTELFASEDEPPSLSLLPIETRRRSESLARLKHQPIEWSRVLLDPNDPRQL QESLRKLTETKTIPAADAVELGLWDSEDASERHQLRADGTVEVPAWRYALVNFPHPLLQAGLTVLDTPGLNALGAEPELT LSVIPNAHAVIYLLATDSGVTRSDLEIWQKYVHRHANYHVAVLNKIDMLWDELKSDAEVQATIERQAEETARVLKLPRSR VFAVSAQKALSATIRGDAAVRARSGIESLEYLLAHQVIPARRDMLFNAVNREVNALLDESRVDLAARLKQYSDELILLTQ LSGKNRELIEQTRATLQKEKDAYDATAEQFRTTRRMVQSQGEQLLAQLSDETLDGILKAGRAALEDSWTTRGLTNGIREL SDGMGKRLQQATQLSDNMLAALEKAYARFHRHHRLPKMQVPRLDLSAYRNRLDVLIRETEVFCTDPANLLLEKRFMIRRF YAGLAEEVRQAFKLARTEAERWLRIALDPLMTRIREHKHFLDARLANLQRILENMGTLHGRMAQIKDEINQLRQDKAELV RIAGDLAA
Sequences:
>Translated_648_residues MGGPGDDERKQQQTMSIHLEQEVAGYSARRMRLASAITDYADWLDRQHGIDAERTLRLADTASALRRDKLVVAFVAEFSR GKTELINALFFADHGQRLLPSDAGRTTMCPTELFASEDEPPSLSLLPIETRRRSESLARLKHQPIEWSRVLLDPNDPRQL QESLRKLTETKTIPAADAVELGLWDSEDASERHQLRADGTVEVPAWRYALVNFPHPLLQAGLTVLDTPGLNALGAEPELT LSVIPNAHAVIYLLATDSGVTRSDLEIWQKYVHRHANYHVAVLNKIDMLWDELKSDAEVQATIERQAEETARVLKLPRSR VFAVSAQKALSATIRGDAAVRARSGIESLEYLLAHQVIPARRDMLFNAVNREVNALLDESRVDLAARLKQYSDELILLTQ LSGKNRELIEQTRATLQKEKDAYDATAEQFRTTRRMVQSQGEQLLAQLSDETLDGILKAGRAALEDSWTTRGLTNGIREL SDGMGKRLQQATQLSDNMLAALEKAYARFHRHHRLPKMQVPRLDLSAYRNRLDVLIRETEVFCTDPANLLLEKRFMIRRF YAGLAEEVRQAFKLARTEAERWLRIALDPLMTRIREHKHFLDARLANLQRILENMGTLHGRMAQIKDEINQLRQDKAELV RIAGDLAA >Mature_647_residues GGPGDDERKQQQTMSIHLEQEVAGYSARRMRLASAITDYADWLDRQHGIDAERTLRLADTASALRRDKLVVAFVAEFSRG KTELINALFFADHGQRLLPSDAGRTTMCPTELFASEDEPPSLSLLPIETRRRSESLARLKHQPIEWSRVLLDPNDPRQLQ ESLRKLTETKTIPAADAVELGLWDSEDASERHQLRADGTVEVPAWRYALVNFPHPLLQAGLTVLDTPGLNALGAEPELTL SVIPNAHAVIYLLATDSGVTRSDLEIWQKYVHRHANYHVAVLNKIDMLWDELKSDAEVQATIERQAEETARVLKLPRSRV FAVSAQKALSATIRGDAAVRARSGIESLEYLLAHQVIPARRDMLFNAVNREVNALLDESRVDLAARLKQYSDELILLTQL SGKNRELIEQTRATLQKEKDAYDATAEQFRTTRRMVQSQGEQLLAQLSDETLDGILKAGRAALEDSWTTRGLTNGIRELS DGMGKRLQQATQLSDNMLAALEKAYARFHRHHRLPKMQVPRLDLSAYRNRLDVLIRETEVFCTDPANLLLEKRFMIRRFY AGLAEEVRQAFKLARTEAERWLRIALDPLMTRIREHKHFLDARLANLQRILENMGTLHGRMAQIKDEINQLRQDKAELVR IAGDLAA
Specific function: Unknown
COG id: COG0699
COG function: function code R; Predicted GTPases (dynamin-related)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73441; Mature: 73309
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00574 FATTY_ACID_DESATUR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGPGDDERKQQQTMSIHLEQEVAGYSARRMRLASAITDYADWLDRQHGIDAERTLRLAD CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH TASALRRDKLVVAFVAEFSRGKTELINALFFADHGQRLLPSDAGRTTMCPTELFASEDEP HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC PSLSLLPIETRRRSESLARLKHQPIEWSRVLLDPNDPRQLQESLRKLTETKTIPAADAVE CCEEEEECHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHE LGLWDSEDASERHQLRADGTVEVPAWRYALVNFPHPLLQAGLTVLDTPGLNALGAEPELT ECCCCCCCHHHHHHHCCCCCEECCHHHHHHHCCCHHHHHCCCEEEECCCCCCCCCCCCEE LSVIPNAHAVIYLLATDSGVTRSDLEIWQKYVHRHANYHVAVLNKIDMLWDELKSDAEVQ EEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHH ATIERQAEETARVLKLPRSRVFAVSAQKALSATIRGDAAVRARSGIESLEYLLAHQVIPA HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH RRDMLFNAVNREVNALLDESRVDLAARLKQYSDELILLTQLSGKNRELIEQTRATLQKEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH DAYDATAEQFRTTRRMVQSQGEQLLAQLSDETLDGILKAGRAALEDSWTTRGLTNGIREL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SDGMGKRLQQATQLSDNMLAALEKAYARFHRHHRLPKMQVPRLDLSAYRNRLDVLIRETE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCE VFCTDPANLLLEKRFMIRRFYAGLAEEVRQAFKLARTEAERWLRIALDPLMTRIREHKHF EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDARLANLQRILENMGTLHGRMAQIKDEINQLRQDKAELVRIAGDLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GGPGDDERKQQQTMSIHLEQEVAGYSARRMRLASAITDYADWLDRQHGIDAERTLRLAD CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH TASALRRDKLVVAFVAEFSRGKTELINALFFADHGQRLLPSDAGRTTMCPTELFASEDEP HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC PSLSLLPIETRRRSESLARLKHQPIEWSRVLLDPNDPRQLQESLRKLTETKTIPAADAVE CCEEEEECHHHHHHHHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHE LGLWDSEDASERHQLRADGTVEVPAWRYALVNFPHPLLQAGLTVLDTPGLNALGAEPELT ECCCCCCCHHHHHHHCCCCCEECCHHHHHHHCCCHHHHHCCCEEEECCCCCCCCCCCCEE LSVIPNAHAVIYLLATDSGVTRSDLEIWQKYVHRHANYHVAVLNKIDMLWDELKSDAEVQ EEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHH ATIERQAEETARVLKLPRSRVFAVSAQKALSATIRGDAAVRARSGIESLEYLLAHQVIPA HHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH RRDMLFNAVNREVNALLDESRVDLAARLKQYSDELILLTQLSGKNRELIEQTRATLQKEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH DAYDATAEQFRTTRRMVQSQGEQLLAQLSDETLDGILKAGRAALEDSWTTRGLTNGIREL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SDGMGKRLQQATQLSDNMLAALEKAYARFHRHHRLPKMQVPRLDLSAYRNRLDVLIRETE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCE VFCTDPANLLLEKRFMIRRFYAGLAEEVRQAFKLARTEAERWLRIALDPLMTRIREHKHF EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDARLANLQRILENMGTLHGRMAQIKDEINQLRQDKAELVRIAGDLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA