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The map label for this gene is ypjD [H]

Identifier: 74318390

GI number: 74318390

Start: 2447148

End: 2447936

Strand: Reverse

Name: ypjD [H]

Synonym: Tbd_2372

Alternate gene names: 74318390

Gene position: 2447936-2447148 (Counterclockwise)

Preceding gene: 74318397

Following gene: 74318389

Centisome position: 84.13

GC content: 66.41

Gene sequence:

>789_bases
ATGTCTCCGTTTTCGCTGGCCGCCCTGTGCGTGAGCGCCGCGTATGGCTGGATGGCCTGGCGCATGCGCAGCGTCTCCCC
GCAATCGTTCTGGCTACGCCTCGGTCTGCCTGCGACGCTGCTCGCGCACGGGGCCTTGCTGTACGTATCGGTACTCGGCG
AGGGCGATATCCGCCTCGGCTTCGGCAACTCGGTGTCGACCGTGTTCTGGCTGGCGGCGCTCATGTACTGGGCCAGCAGC
CACGGCGCGCCGCTCGCCCGGGTACAGTCCTGGGTCACCGGCCTTGCTTCCGCCGGAACGCTCTTCCTGGCCATTTTCAC
GGCCGCGCATGTCATCCCCAACTCGCAGATGCTGGCCCTGCGCGCCCATCTCGCGGTCTCGTTTCTCGCCTATGGCCTGC
TCGCCGTGGCCGCGCTGCACGCCCTGCTGATGACAATCCTCGAAAAGCAGTTGCACCGCGGTGCCGTGGCGGTGGGTGCG
GCGCCGCCCCTGCTTACCCTGGAGGCGATCCTTTTTCGCACCATCGGTGCGGGCTTCGTGCTGCTGACGCTCGTGGTGTC
GAGCGGCATCCTGTTTTCCGAGGAGCTGTTCGGCCAACCGCTGCAACTCACGCACAAGGTCGTCTTCGGCATCCTCTCGT
GGCTGGTTTTCGGCGGCCTGCTGCTCGGCCGGCATTTCCGTGGCTGGCGAGGGCGCACGGCCTTGTGGTGGACGATCACG
GGCTTCACCCTCTTGCTCATGGCCTACGTCGGGACGCAATTCGTGCTCGAAGTCGTGCTCGGGCGTTGA

Upstream 100 bases:

>100_bases
GACGCCGGCGAGGCGTCCACTGAGGTTTTCGAACATGGCTTCCTTGTTGCCGCCTCGGGCGGCATGGATAATAGGCTGGA
ACGCCTTCCTATTTTAACGA

Downstream 100 bases:

>100_bases
GGCGGGACTGATTGGACAACATTTCCACCGGCACGCTGTTCGGCGTGCTCGCGGTCCTGCTTCTGACCTCGGCGTTCTTC
TCTGCATCCGAGACCGCGAT

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSPFSLAALCVSAAYGWMAWRMRSVSPQSFWLRLGLPATLLAHGALLYVSVLGEGDIRLGFGNSVSTVFWLAALMYWASS
HGAPLARVQSWVTGLASAGTLFLAIFTAAHVIPNSQMLALRAHLAVSFLAYGLLAVAALHALLMTILEKQLHRGAVAVGA
APPLLTLEAILFRTIGAGFVLLTLVVSSGILFSEELFGQPLQLTHKVVFGILSWLVFGGLLLGRHFRGWRGRTALWWTIT
GFTLLLMAYVGTQFVLEVVLGR

Sequences:

>Translated_262_residues
MSPFSLAALCVSAAYGWMAWRMRSVSPQSFWLRLGLPATLLAHGALLYVSVLGEGDIRLGFGNSVSTVFWLAALMYWASS
HGAPLARVQSWVTGLASAGTLFLAIFTAAHVIPNSQMLALRAHLAVSFLAYGLLAVAALHALLMTILEKQLHRGAVAVGA
APPLLTLEAILFRTIGAGFVLLTLVVSSGILFSEELFGQPLQLTHKVVFGILSWLVFGGLLLGRHFRGWRGRTALWWTIT
GFTLLLMAYVGTQFVLEVVLGR
>Mature_261_residues
SPFSLAALCVSAAYGWMAWRMRSVSPQSFWLRLGLPATLLAHGALLYVSVLGEGDIRLGFGNSVSTVFWLAALMYWASSH
GAPLARVQSWVTGLASAGTLFLAIFTAAHVIPNSQMLALRAHLAVSFLAYGLLAVAALHALLMTILEKQLHRGAVAVGAA
PPLLTLEAILFRTIGAGFVLLTLVVSSGILFSEELFGQPLQLTHKVVFGILSWLVFGGLLLGRHFRGWRGRTALWWTITG
FTLLLMAYVGTQFVLEVVLGR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=158, Percent_Identity=32.2784810126582, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28276; Mature: 28145

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFSLAALCVSAAYGWMAWRMRSVSPQSFWLRLGLPATLLAHGALLYVSVLGEGDIRLG
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEECCHHHHHHHHHHHHHHEECCCCEEEE
FGNSVSTVFWLAALMYWASSHGAPLARVQSWVTGLASAGTLFLAIFTAAHVIPNSQMLAL
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RAHLAVSFLAYGLLAVAALHALLMTILEKQLHRGAVAVGAAPPLLTLEAILFRTIGAGFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHH
LLTLVVSSGILFSEELFGQPLQLTHKVVFGILSWLVFGGLLLGRHFRGWRGRTALWWTIT
HHHHHHHCCCEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
GFTLLLMAYVGTQFVLEVVLGR
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPFSLAALCVSAAYGWMAWRMRSVSPQSFWLRLGLPATLLAHGALLYVSVLGEGDIRLG
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEECCHHHHHHHHHHHHHHEECCCCEEEE
FGNSVSTVFWLAALMYWASSHGAPLARVQSWVTGLASAGTLFLAIFTAAHVIPNSQMLAL
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RAHLAVSFLAYGLLAVAALHALLMTILEKQLHRGAVAVGAAPPLLTLEAILFRTIGAGFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHH
LLTLVVSSGILFSEELFGQPLQLTHKVVFGILSWLVFGGLLLGRHFRGWRGRTALWWTIT
HHHHHHHCCCEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
GFTLLLMAYVGTQFVLEVVLGR
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]