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The map label for this gene is yiaD [H]

Identifier: 74318359

GI number: 74318359

Start: 2416279

End: 2416956

Strand: Direct

Name: yiaD [H]

Synonym: Tbd_2341

Alternate gene names: 74318359

Gene position: 2416279-2416956 (Clockwise)

Preceding gene: 74318358

Following gene: 74318360

Centisome position: 83.04

GC content: 64.16

Gene sequence:

>678_bases
ATGCATAAGCCTTATCTCGCCGCGCCCTTGCTGACTGCTCTTCTCATCGCCGGCTGCGCCACCAACGATCTCGGCGAACC
GCGCGAACTGAGCAAGACGCAAAAGGGCGCCATGATCGGCACGGTCAGCGGTGCTGCGCTCGGCGCCATCATCAACCACA
AGAATCGCGGCAAGGGCGCGCTGATCGGCGCGGTCGGCGGCGGTCTCACGGGCGCCGGCGTCGGCTACTACATGGACCAG
CAGGCCAAGGACCTGCAGAAGCAGCTGCGGCCCGAAATCGAGCATGGCGACATCAGCGTCGAAAAACGCGCCAGCGACAA
CGCGCTGCTCGTCAGCATGACCGCCAGCACCGGCTTCGACAACGATTCGGCGGCGCTGAAGGCGGGCTATCTGCCGACGC
TCGACAAGATTTCGCGCGTGCTGAATCAGTATGGCAAGACGACCGTGACCGTGATCGGGCATACCGACAGCGTCGGCACC
ACGCAGTACAACCAGGCGCTCTCGGAACGGCGCGCACAGTCGGTCCTCGACTATTTCGCGTCGCAGAAAGTCAATCCGCT
ACGCCTCGAATCCTACGGCAAGGGCGAAACCGAGCCGCGTGCCGACAACAGCACCGAAGACGGCCGTCGGCTCAACCGGC
GCGTCGAATTGTGGATCCTGCCCGTGGTCTCGGGCTGA

Upstream 100 bases:

>100_bases
GCGGTCCGTGCCGCGGGAGAAGTTCGACAGGTGAACCTGTTGCTCCGACTGCCACGCTGCTGCGTGGGCCGACACCTTCA
CTACAGAAAAGGAGCTATCC

Downstream 100 bases:

>100_bases
CCCACCCCCCCAAACATCAGGAAAACCGGAACATGATCGAAACCCAAGCCCACTTCGACCAGGCCATGGCCTTGTTCGAC
ACGGCCAATGCCGAAGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MHKPYLAAPLLTALLIAGCATNDLGEPRELSKTQKGAMIGTVSGAALGAIINHKNRGKGALIGAVGGGLTGAGVGYYMDQ
QAKDLQKQLRPEIEHGDISVEKRASDNALLVSMTASTGFDNDSAALKAGYLPTLDKISRVLNQYGKTTVTVIGHTDSVGT
TQYNQALSERRAQSVLDYFASQKVNPLRLESYGKGETEPRADNSTEDGRRLNRRVELWILPVVSG

Sequences:

>Translated_225_residues
MHKPYLAAPLLTALLIAGCATNDLGEPRELSKTQKGAMIGTVSGAALGAIINHKNRGKGALIGAVGGGLTGAGVGYYMDQ
QAKDLQKQLRPEIEHGDISVEKRASDNALLVSMTASTGFDNDSAALKAGYLPTLDKISRVLNQYGKTTVTVIGHTDSVGT
TQYNQALSERRAQSVLDYFASQKVNPLRLESYGKGETEPRADNSTEDGRRLNRRVELWILPVVSG
>Mature_225_residues
MHKPYLAAPLLTALLIAGCATNDLGEPRELSKTQKGAMIGTVSGAALGAIINHKNRGKGALIGAVGGGLTGAGVGYYMDQ
QAKDLQKQLRPEIEHGDISVEKRASDNALLVSMTASTGFDNDSAALKAGYLPTLDKISRVLNQYGKTTVTVIGHTDSVGT
TQYNQALSERRAQSVLDYFASQKVNPLRLESYGKGETEPRADNSTEDGRRLNRRVELWILPVVSG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=220, Percent_Identity=41.8181818181818, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 24011; Mature: 24011

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKPYLAAPLLTALLIAGCATNDLGEPRELSKTQKGAMIGTVSGAALGAIINHKNRGKGA
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCEE
LIGAVGGGLTGAGVGYYMDQQAKDLQKQLRPEIEHGDISVEKRASDNALLVSMTASTGFD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCC
NDSAALKAGYLPTLDKISRVLNQYGKTTVTVIGHTDSVGTTQYNQALSERRAQSVLDYFA
CCCCCEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
SQKVNPLRLESYGKGETEPRADNSTEDGRRLNRRVELWILPVVSG
HCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECC
>Mature Secondary Structure
MHKPYLAAPLLTALLIAGCATNDLGEPRELSKTQKGAMIGTVSGAALGAIINHKNRGKGA
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCEE
LIGAVGGGLTGAGVGYYMDQQAKDLQKQLRPEIEHGDISVEKRASDNALLVSMTASTGFD
EEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCC
NDSAALKAGYLPTLDKISRVLNQYGKTTVTVIGHTDSVGTTQYNQALSERRAQSVLDYFA
CCCCCEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
SQKVNPLRLESYGKGETEPRADNSTEDGRRLNRRVELWILPVVSG
HCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]