| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is spsI [H]
Identifier: 74318353
GI number: 74318353
Start: 2409044
End: 2409757
Strand: Reverse
Name: spsI [H]
Synonym: Tbd_2335
Alternate gene names: 74318353
Gene position: 2409757-2409044 (Counterclockwise)
Preceding gene: 74318354
Following gene: 74318352
Centisome position: 82.81
GC content: 68.91
Gene sequence:
>714_bases TTGAGCGTTGCGCCCTCGGCGATGATCCTTGCGGCGGGTCGCGGCGAACGCATGCGTCCCCTGACCGACCACACGCCCAA GCCGCTTCTGCACGTGGGCGGAAAACCGCTGATCGTCTGGCACATCGAACGGCTGCGCGCCGCCGGCTTCCGCCACGTCG TCATCAACCACGCGCATCTCGGCGAACAGATTGAGGCGGCGCTCGGCGATGGCGCGGCCTTGGGCGTTGCAATCGATTAT TCGCGCGAAGCGAGCGCGCTCGAAACGGCGGGCGGCATCGCGACCGCGTTGCCCTTGATCCGTGGCGAGGCCTTTGCCGT CGTCAACGGCGACATCTATACCGACTACGACTTCGGGCGCCTGGCCGAGCCGCTCACCTGGCTCGCCGCAGGCGGCGACC AGGCCCATCTCGTCATGGTCGACAACCCGCCGCAGCACCCCAACGGCGATTTCGTGCTCGAAGACGGCCGGGTGAAAAGC GGCGAGCAGGCCGCCGAGTCATCTCGCCTGACCTTTTCCGGCATCGGCGTCTACCGGCGCGCGCTTTTCGCCGACCTACG CGCGGGCGAGAAGGCGCCGCTCGCGCCGCTGCTGCGGCAGGCGATGGACGCGGCCCGGGTCAGCGGCGAACATTACAGCG GGCGCTGGACCGACGTCGGCACGCCGGCGCGTCTTGCCGCGCTCGACGAGGAACTGAGACGACATGCAGCCTGA
Upstream 100 bases:
>100_bases ATTACCTGCGCAGCGTGTGCGGGCGCTACGACGAACTCAAGCCCTTGCTGCTGCTGCTCGACGCGCTGCAGGACAGGCAG CCGCAGGCGGGGTACACGTT
Downstream 100 bases:
>100_bases TTCCGCGATTCATCGCGCGCGTCGCGAACGCGTGCTCGAACAGATGGGCGAGGGCGTGATGGTCATCGCGACCGCGCCCG AGGTCCCGCGCAACCGCGAC
Product: putative nucleotidyl transferase
Products: dTDPglucose; Diphosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSVAPSAMILAAGRGERMRPLTDHTPKPLLHVGGKPLIVWHIERLRAAGFRHVVINHAHLGEQIEAALGDGAALGVAIDY SREASALETAGGIATALPLIRGEAFAVVNGDIYTDYDFGRLAEPLTWLAAGGDQAHLVMVDNPPQHPNGDFVLEDGRVKS GEQAAESSRLTFSGIGVYRRALFADLRAGEKAPLAPLLRQAMDAARVSGEHYSGRWTDVGTPARLAALDEELRRHAA
Sequences:
>Translated_237_residues MSVAPSAMILAAGRGERMRPLTDHTPKPLLHVGGKPLIVWHIERLRAAGFRHVVINHAHLGEQIEAALGDGAALGVAIDY SREASALETAGGIATALPLIRGEAFAVVNGDIYTDYDFGRLAEPLTWLAAGGDQAHLVMVDNPPQHPNGDFVLEDGRVKS GEQAAESSRLTFSGIGVYRRALFADLRAGEKAPLAPLLRQAMDAARVSGEHYSGRWTDVGTPARLAALDEELRRHAA >Mature_236_residues SVAPSAMILAAGRGERMRPLTDHTPKPLLHVGGKPLIVWHIERLRAAGFRHVVINHAHLGEQIEAALGDGAALGVAIDYS REASALETAGGIATALPLIRGEAFAVVNGDIYTDYDFGRLAEPLTWLAAGGDQAHLVMVDNPPQHPNGDFVLEDGRVKSG EQAAESSRLTFSGIGVYRRALFADLRAGEKAPLAPLLRQAMDAARVSGEHYSGRWTDVGTPARLAALDEELRRHAA
Specific function: Catalyzes The Formation Of Dtdp-Glucose, From Dttp And Glucose 1-Phosphate, As Well As Its Pyrophosphorolysis. [C]
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-1-phosphate thymidylyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI11761621, Length=121, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI11761619, Length=121, Percent_Identity=36.3636363636364, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI133931050, Length=225, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6320148, Length=144, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI21355443, Length=226, Percent_Identity=28.3185840707965, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24644084, Length=226, Percent_Identity=28.3185840707965, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24653912, Length=127, Percent_Identity=37.7952755905512, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: 2.7.7.24 [C]
Molecular weight: Translated: 25316; Mature: 25185
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAPSAMILAAGRGERMRPLTDHTPKPLLHVGGKPLIVWHIERLRAAGFRHVVINHAHL CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEEHHHHHHCCCEEEEEECHHH GEQIEAALGDGAALGVAIDYSREASALETAGGIATALPLIRGEAFAVVNGDIYTDYDFGR HHHHHHHHCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHHCCCEEEEEECCEEECCCHHH LAEPLTWLAAGGDQAHLVMVDNPPQHPNGDFVLEDGRVKSGEQAAESSRLTFSGIGVYRR HHHHHHEEECCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHHHHCCCEEEEHHHHHHH ALFADLRAGEKAPLAPLLRQAMDAARVSGEHYSGRWTDVGTPARLAALDEELRRHAA HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SVAPSAMILAAGRGERMRPLTDHTPKPLLHVGGKPLIVWHIERLRAAGFRHVVINHAHL CCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCEEEEEEHHHHHHCCCEEEEEECHHH GEQIEAALGDGAALGVAIDYSREASALETAGGIATALPLIRGEAFAVVNGDIYTDYDFGR HHHHHHHHCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHHCCCEEEEEECCEEECCCHHH LAEPLTWLAAGGDQAHLVMVDNPPQHPNGDFVLEDGRVKSGEQAAESSRLTFSGIGVYRR HHHHHHEEECCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHHHHCCCEEEEHHHHHHH ALFADLRAGEKAPLAPLLRQAMDAARVSGEHYSGRWTDVGTPARLAALDEELRRHAA HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dTTP; D-Glucose 1-phosphate; H+ [C]
Specific reaction: dTTP + D-Glucose 1-phosphate + H+ --> dTDPglucose + Diphosphate [C]
General reaction: Nucleotidyl group transfer [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]