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The map label for this gene is rubB [H]

Identifier: 74318333

GI number: 74318333

Start: 2389332

End: 2390468

Strand: Reverse

Name: rubB [H]

Synonym: Tbd_2315

Alternate gene names: 74318333

Gene position: 2390468-2389332 (Counterclockwise)

Preceding gene: 74318334

Following gene: 74318332

Centisome position: 82.15

GC content: 71.33

Gene sequence:

>1137_bases
ATGCAACCGATACTGATCGTCGGCTCCGGCCTCGCCGGCTACACCCTGCTCAAGGAAATCCGCAAGCGCGACAGCACGAC
GCCGGTCACGCTCGTGACGGCGGACGACGGCGTCTTCTATTCGAAGCCCAATCTGTCGAACGCGCTCGCCGCGGGCAAGT
CGGCGGCCGCGCTGGCCGGGGCATCACCCGAGAAGATGGCAGCCGATTTCGGTGCGACGGTGAAGCCGCGGACGCGCGTT
CTCGCGATCGACACGACCCGCCGGCGCGTGCAGACCGACCAGGGCGAACTCGGCTACGGCAAGCTCGTGCTCGCGCTCGG
TGCCGACCCGATCCCGCACGGGCTGTCCGGCAGCGCGGCGGGTGACGTTCTGGCCGTGAACGATCTCGCCGACTACGCGG
CCTTCCGTCGCGCGATCGAGGGCAAGAGGCGCGTCGCCGTGCTCGGCGGCGGCCTCATCGGCTGCGAATTCGCCAACGAC
CTCGCGCAGGCCGGTTTCGCGGTCGACGTCGTGCATCTCGGTGCCTGGCCGCTCGAACGCCTGATCCCGCCCGAAGCGGG
GGAGCGCCTGGCCGACAGCCTCGCCGCGCTCGGCGTGACCTGGCATTTCGGGCGCAGCGCGAAAAGCGTCGAGCCGGATG
CCGGCGGCTACCGCCTCGTGCTCGACGACGGCAGCGCCGTTGTCGCCGAGGTCGTGCTCTCCGCGATCGGCCTGCGGCCG
CGCGTGCAACTCGCACAGGCGGCCGGGATGCAGGTGGGGCGCGGAATCCGGGCCGACCGCCTGCTCGAGACGAGCGCCGC
AGACGTCTATGCGCTCGGCGACTGCGCCGAAGTCGACGGCGCCAATCTGCCATTCGTGCAGCCGCTGCTCGTGCAGGCGC
GCGCACTCGCGGCGACCCTGACCGGCACGCCGACCGCTGTCGCGTATCCCGCGATGCCGGTGATGGTGAAGACGCCGGCA
CAACCGGTCGCGGTGCTGCCGCCCAAGGCCGGTGTTGCCGGCGGCTGGCAGGTCGACTGCGGCGAGGGCGGGGTCTGCGC
GCTCCACCTCGGCAAGGCCGGCGAGATGCAGGGTTTCGTCCTGACCGGAAGCGAAACCGGCCGGCGAACGGCCCTGCTCA
AGCAACTGGCAGCCTAG

Upstream 100 bases:

>100_bases
CGACTGCGGCGTCGCGAAGGCCGACTTCGAGATGGTCGAAGTCGTCGCCTGACCGCCACGGGGGCCGCGGCCCCCGGTTT
TAACAACCAAGGAGCGTCCC

Downstream 100 bases:

>100_bases
ACGCCCGCGGCCGGCGGCGCACCCCCCGGCCGCGGCACGCATGGTCAGGCCGCGGCGCATCGGCGAGAATGCGTCATGGA
CATCTTCCGCATCTTTCACC

Product: putative rubredoxin reductase

Products: NA

Alternate protein names: RdxR [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQPILIVGSGLAGYTLLKEIRKRDSTTPVTLVTADDGVFYSKPNLSNALAAGKSAAALAGASPEKMAADFGATVKPRTRV
LAIDTTRRRVQTDQGELGYGKLVLALGADPIPHGLSGSAAGDVLAVNDLADYAAFRRAIEGKRRVAVLGGGLIGCEFAND
LAQAGFAVDVVHLGAWPLERLIPPEAGERLADSLAALGVTWHFGRSAKSVEPDAGGYRLVLDDGSAVVAEVVLSAIGLRP
RVQLAQAAGMQVGRGIRADRLLETSAADVYALGDCAEVDGANLPFVQPLLVQARALAATLTGTPTAVAYPAMPVMVKTPA
QPVAVLPPKAGVAGGWQVDCGEGGVCALHLGKAGEMQGFVLTGSETGRRTALLKQLAA

Sequences:

>Translated_378_residues
MQPILIVGSGLAGYTLLKEIRKRDSTTPVTLVTADDGVFYSKPNLSNALAAGKSAAALAGASPEKMAADFGATVKPRTRV
LAIDTTRRRVQTDQGELGYGKLVLALGADPIPHGLSGSAAGDVLAVNDLADYAAFRRAIEGKRRVAVLGGGLIGCEFAND
LAQAGFAVDVVHLGAWPLERLIPPEAGERLADSLAALGVTWHFGRSAKSVEPDAGGYRLVLDDGSAVVAEVVLSAIGLRP
RVQLAQAAGMQVGRGIRADRLLETSAADVYALGDCAEVDGANLPFVQPLLVQARALAATLTGTPTAVAYPAMPVMVKTPA
QPVAVLPPKAGVAGGWQVDCGEGGVCALHLGKAGEMQGFVLTGSETGRRTALLKQLAA
>Mature_378_residues
MQPILIVGSGLAGYTLLKEIRKRDSTTPVTLVTADDGVFYSKPNLSNALAAGKSAAALAGASPEKMAADFGATVKPRTRV
LAIDTTRRRVQTDQGELGYGKLVLALGADPIPHGLSGSAAGDVLAVNDLADYAAFRRAIEGKRRVAVLGGGLIGCEFAND
LAQAGFAVDVVHLGAWPLERLIPPEAGERLADSLAALGVTWHFGRSAKSVEPDAGGYRLVLDDGSAVVAEVVLSAIGLRP
RVQLAQAAGMQVGRGIRADRLLETSAADVYALGDCAEVDGANLPFVQPLLVQARALAATLTGTPTAVAYPAMPVMVKTPA
QPVAVLPPKAGVAGGWQVDCGEGGVCALHLGKAGEMQGFVLTGSETGRRTALLKQLAA

Specific function: Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=308, Percent_Identity=26.6233766233766, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI65787454, Length=308, Percent_Identity=26.6233766233766, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI21389617, Length=308, Percent_Identity=26.6233766233766, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI1789065, Length=373, Percent_Identity=36.1930294906166, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI1789765, Length=308, Percent_Identity=23.3766233766234, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788892, Length=281, Percent_Identity=25.9786476868327, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559934, Length=318, Percent_Identity=22.3270440251572, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32564386, Length=305, Percent_Identity=23.6065573770492, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.1 [H]

Molecular weight: Translated: 38798; Mature: 38798

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPILIVGSGLAGYTLLKEIRKRDSTTPVTLVTADDGVFYSKPNLSNALAAGKSAAALAG
CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCHHHHHCCCCHHHHCC
ASPEKMAADFGATVKPRTRVLAIDTTRRRVQTDQGELGYGKLVLALGADPIPHGLSGSAA
CCHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
GDVLAVNDLADYAAFRRAIEGKRRVAVLGGGLIGCEFANDLAQAGFAVDVVHLGAWPLER
CCEEEEHHHHHHHHHHHHHCCCCEEEEEECCEEEHHHHHHHHHCCCEEEEEECCCCCHHH
LIPPEAGERLADSLAALGVTWHFGRSAKSVEPDAGGYRLVLDDGSAVVAEVVLSAIGLRP
CCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCC
RVQLAQAAGMQVGRGIRADRLLETSAADVYALGDCAEVDGANLPFVQPLLVQARALAATL
HHHHHHHHCHHHCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHEEE
TGTPTAVAYPAMPVMVKTPAQPVAVLPPKAGVAGGWQVDCGEGGVCALHLGKAGEMQGFV
CCCCCEEECCCCCEEEECCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEE
LTGSETGRRTALLKQLAA
EECCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQPILIVGSGLAGYTLLKEIRKRDSTTPVTLVTADDGVFYSKPNLSNALAAGKSAAALAG
CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCHHHHHCCCCHHHHCC
ASPEKMAADFGATVKPRTRVLAIDTTRRRVQTDQGELGYGKLVLALGADPIPHGLSGSAA
CCHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
GDVLAVNDLADYAAFRRAIEGKRRVAVLGGGLIGCEFANDLAQAGFAVDVVHLGAWPLER
CCEEEEHHHHHHHHHHHHHCCCCEEEEEECCEEEHHHHHHHHHCCCEEEEEECCCCCHHH
LIPPEAGERLADSLAALGVTWHFGRSAKSVEPDAGGYRLVLDDGSAVVAEVVLSAIGLRP
CCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCC
RVQLAQAAGMQVGRGIRADRLLETSAADVYALGDCAEVDGANLPFVQPLLVQARALAATL
HHHHHHHHCHHHCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHEEE
TGTPTAVAYPAMPVMVKTPAQPVAVLPPKAGVAGGWQVDCGEGGVCALHLGKAGEMQGFV
CCCCCEEECCCCCEEEECCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEE
LTGSETGRRTALLKQLAA
EECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA