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The map label for this gene is yjdF [H]

Identifier: 74318305

GI number: 74318305

Start: 2362200

End: 2362955

Strand: Direct

Name: yjdF [H]

Synonym: Tbd_2287

Alternate gene names: 74318305

Gene position: 2362200-2362955 (Clockwise)

Preceding gene: 74318304

Following gene: 74318320

Centisome position: 81.18

GC content: 64.29

Gene sequence:

>756_bases
ATGGTCAGCGACAACGCAGCTGCAATCGACGATCCTCGCCGCACACACCGCAGGTATCTCCTGATCCTCAGCGGGCTGTT
CGCGCTGCTGTGGATAGCGCTCGCGATCGATCCGCTATACCGCGACGACTGGGCGCTCGAGAACGCCCTGGTCGTCGTGT
TCGTGCTGGCGATCGCCCTGAGCTACAGGCGGCTGCCCCTGTCGCGCATATCGTACACGCTGATATTTCTGTTCCTCTGC
CTGCACGAGGTCGGCGCGCACTACACCTACGCCGAGGTGCCGTACGACGACTGGTTCATGGCCGTCAGCGGAGTCAGCCT
CAACGACGTGCTGGGGTGGGAGCGCAACAATTTCGACCGGGTCGTGCACTTTCTGTATGGCCTGCTGATCGCCTACCCGG
TGCGCGAAATCTTCCTGCGCGTGGCGGCGGTACGGGGCTTCTGGGGCTACTTCCTGCCGCTCGACCTGACCATGTCCACG
TCAGCGATGTTCGAGCTCTTCGAGTGGGCGGCAGCCGAACTGTTCGGCGGCGGCCTCGGCGTCGCCTACCTCGGCACCCA
GGGCGACGTTTGGGACGCGCACAAGGACATGGCGCTTGCAAGCCTTGGCGCGTTGATCGCCATGCTGATCACCTACGCCA
TCAACCGCACGCTGCAACGCGACTTCGCCGAGGAATGGGCGCAGAGCCTCAAGGTAAAGGAGCCGCGGCCGCTGGGCGAG
TATGCGCTGGCACGCATGCTCAAGCGCCGCGCTTGA

Upstream 100 bases:

>100_bases
TTTCCAGGGGATGTCGTCGGACCTGATCGCTCGGCTTCGGGCTCAAGCTCAGCCAGCCACCCCGGGCGCATAACCCGAAC
AACCGACTCCACGACAGGTC

Downstream 100 bases:

>100_bases
TCCCCGCGGTCTTCGTCGCAAAGACCTGATCAGGAAGGCCGCCGAGCGCATCCCCACAGAACGCCTGTGGGTCAACCCGA
CTGCGACCTCAAGACGCGGC

Product: putative integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MVSDNAAAIDDPRRTHRRYLLILSGLFALLWIALAIDPLYRDDWALENALVVVFVLAIALSYRRLPLSRISYTLIFLFLC
LHEVGAHYTYAEVPYDDWFMAVSGVSLNDVLGWERNNFDRVVHFLYGLLIAYPVREIFLRVAAVRGFWGYFLPLDLTMST
SAMFELFEWAAAELFGGGLGVAYLGTQGDVWDAHKDMALASLGALIAMLITYAINRTLQRDFAEEWAQSLKVKEPRPLGE
YALARMLKRRA

Sequences:

>Translated_251_residues
MVSDNAAAIDDPRRTHRRYLLILSGLFALLWIALAIDPLYRDDWALENALVVVFVLAIALSYRRLPLSRISYTLIFLFLC
LHEVGAHYTYAEVPYDDWFMAVSGVSLNDVLGWERNNFDRVVHFLYGLLIAYPVREIFLRVAAVRGFWGYFLPLDLTMST
SAMFELFEWAAAELFGGGLGVAYLGTQGDVWDAHKDMALASLGALIAMLITYAINRTLQRDFAEEWAQSLKVKEPRPLGE
YALARMLKRRA
>Mature_251_residues
MVSDNAAAIDDPRRTHRRYLLILSGLFALLWIALAIDPLYRDDWALENALVVVFVLAIALSYRRLPLSRISYTLIFLFLC
LHEVGAHYTYAEVPYDDWFMAVSGVSLNDVLGWERNNFDRVVHFLYGLLIAYPVREIFLRVAAVRGFWGYFLPLDLTMST
SAMFELFEWAAAELFGGGLGVAYLGTQGDVWDAHKDMALASLGALIAMLITYAINRTLQRDFAEEWAQSLKVKEPRPLGE
YALARMLKRRA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=198, Percent_Identity=38.3838383838384, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 28565; Mature: 28565

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSDNAAAIDDPRRTHRRYLLILSGLFALLWIALAIDPLYRDDWALENALVVVFVLAIAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SYRRLPLSRISYTLIFLFLCLHEVGAHYTYAEVPYDDWFMAVSGVSLNDVLGWERNNFDR
HHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCHHHHHCCCCCCHHH
VVHFLYGLLIAYPVREIFLRVAAVRGFWGYFLPLDLTMSTSAMFELFEWAAAELFGGGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VAYLGTQGDVWDAHKDMALASLGALIAMLITYAINRTLQRDFAEEWAQSLKVKEPRPLGE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
YALARMLKRRA
HHHHHHHHHCC
>Mature Secondary Structure
MVSDNAAAIDDPRRTHRRYLLILSGLFALLWIALAIDPLYRDDWALENALVVVFVLAIAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SYRRLPLSRISYTLIFLFLCLHEVGAHYTYAEVPYDDWFMAVSGVSLNDVLGWERNNFDR
HHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCHHHHHCCCCCCHHH
VVHFLYGLLIAYPVREIFLRVAAVRGFWGYFLPLDLTMSTSAMFELFEWAAAELFGGGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VAYLGTQGDVWDAHKDMALASLGALIAMLITYAINRTLQRDFAEEWAQSLKVKEPRPLGE
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
YALARMLKRRA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]