| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318225
Identifier: 74318225
GI number: 74318225
Start: 2287280
End: 2288152
Strand: Reverse
Name: 74318225
Synonym: Tbd_2207
Alternate gene names: NA
Gene position: 2288152-2287280 (Counterclockwise)
Preceding gene: 74318226
Following gene: 74318224
Centisome position: 78.64
GC content: 68.27
Gene sequence:
>873_bases ATGACGCGCGGCGACGGGCGTTTCGTCTCCCGCCCCGTGCCGAGGCTCGCCGCGGGACTTCTCGCGCTCGGCGTGCACCT GCTCTTCGTGTTGCTGCTCGTGTTCGGCGTGTCGTGGCAGACGCGGCATCCCGCGCCGGTAACGGTCGACCTCTGGGAAT CGATCCCGCAACCGCCGGCACCCCGTCCACCCGTGCCGGCGCCGCCCCCGCCCGAGCCGCCGCAGCCCGCGCCGCGGCCG GTCCCCGAACCCGAAGTGAAGAATGAGCCCCCGCCGCCGAAGGCGCCCGACATCGCGCTCGAGAAGAAAAAGGCCGCGGC GGCGAAGGCGGCCGCGCTGGAAAAAGCCGCATTAGAAAAAGCGGCGCAGGAAAAGGCAGCGCAGGAAAAGGCAGCGCAGG AAAAGGCAGCGCAGCAAAAAGCTGAACAGGAAAAGGCCGCCGCGCAGAGAAAACGCGACCTGCTGCGGCAGATGGAGGAA GAGGACGCGATACGGCGGATGGCCGACGAAGAGGCGGCGAATCAGGCGCGTCTGCTGAAGCAGGCGGAAGCGAAAGCGGC CGCCGGCGCGCGGCAGAGCGAAATCGCCCGTCTCGTCGGGCAGCATCGCGATCTCATCAGCGCCAAGGTGCGCGGCAATA CGCGCCTGCCCGACAACCTGGCCGGCAATCCCGAAGTGCGATGCCTGGTCAGGCTGCTTCCGACAGGCGAAGTGCAGAGC GTGCGGGTGACGCGTTCGAGCGGCAACCCCGCGTACGACGACGCCGTCAAGCGCGCGATCGAGAAATCCTCGCCTTTGCC CTTGCCCGCCGACCGCGATGCGCGGGCCGAGTTCGTGCCGGAACTTTCCTTCGTACATCGCCCTAAGGAGTGA
Upstream 100 bases:
>100_bases CGGCCGACAAGAACGTCCGCTACGACGAAGTGATGAAGACCATGACGCTTCTTCAGCGCGAGCAGATCACGCGCATCGGC CTGCTCGCCCGGCCTGCGCC
Downstream 100 bases:
>100_bases GCTGTAGCGCCCCGTGGGGCGCCACGCCGCCGCCGGCCTGGCCTGAAGGCCTGTGCTAAACTCACCCGCCAACCCTGTGC TAGCGAACAAGATGCCTGTA
Product: putative TonB protein
Products: NA
Alternate protein names: NB C-Terminal; LA-Related Transport Transmembrane Protein; NB Protein
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTRGDGRFVSRPVPRLAAGLLALGVHLLFVLLLVFGVSWQTRHPAPVTVDLWESIPQPPAPRPPVPAPPPPEPPQPAPRP VPEPEVKNEPPPPKAPDIALEKKKAAAAKAAALEKAALEKAAQEKAAQEKAAQEKAAQQKAEQEKAAAQRKRDLLRQMEE EDAIRRMADEEAANQARLLKQAEAKAAAGARQSEIARLVGQHRDLISAKVRGNTRLPDNLAGNPEVRCLVRLLPTGEVQS VRVTRSSGNPAYDDAVKRAIEKSSPLPLPADRDARAEFVPELSFVHRPKE
Sequences:
>Translated_290_residues MTRGDGRFVSRPVPRLAAGLLALGVHLLFVLLLVFGVSWQTRHPAPVTVDLWESIPQPPAPRPPVPAPPPPEPPQPAPRP VPEPEVKNEPPPPKAPDIALEKKKAAAAKAAALEKAALEKAAQEKAAQEKAAQEKAAQQKAEQEKAAAQRKRDLLRQMEE EDAIRRMADEEAANQARLLKQAEAKAAAGARQSEIARLVGQHRDLISAKVRGNTRLPDNLAGNPEVRCLVRLLPTGEVQS VRVTRSSGNPAYDDAVKRAIEKSSPLPLPADRDARAEFVPELSFVHRPKE >Mature_289_residues TRGDGRFVSRPVPRLAAGLLALGVHLLFVLLLVFGVSWQTRHPAPVTVDLWESIPQPPAPRPPVPAPPPPEPPQPAPRPV PEPEVKNEPPPPKAPDIALEKKKAAAAKAAALEKAALEKAAQEKAAQEKAAQEKAAQQKAEQEKAAAQRKRDLLRQMEEE DAIRRMADEEAANQARLLKQAEAKAAAGARQSEIARLVGQHRDLISAKVRGNTRLPDNLAGNPEVRCLVRLLPTGEVQSV RVTRSSGNPAYDDAVKRAIEKSSPLPLPADRDARAEFVPELSFVHRPKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31490; Mature: 31359
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRGDGRFVSRPVPRLAAGLLALGVHLLFVLLLVFGVSWQTRHPAPVTVDLWESIPQPPA CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCC PRPPVPAPPPPEPPQPAPRPVPEPEVKNEPPPPKAPDIALEKKKAAAAKAAALEKAALEK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AAQEKAAQEKAAQEKAAQQKAEQEKAAAQRKRDLLRQMEEEDAIRRMADEEAANQARLLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAEAKAAAGARQSEIARLVGQHRDLISAKVRGNTRLPDNLAGNPEVRCLVRLLPTGEVQS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCE VRVTRSSGNPAYDDAVKRAIEKSSPLPLPADRDARAEFVPELSFVHRPKE EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TRGDGRFVSRPVPRLAAGLLALGVHLLFVLLLVFGVSWQTRHPAPVTVDLWESIPQPPA CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCC PRPPVPAPPPPEPPQPAPRPVPEPEVKNEPPPPKAPDIALEKKKAAAAKAAALEKAALEK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AAQEKAAQEKAAQEKAAQQKAEQEKAAAQRKRDLLRQMEEEDAIRRMADEEAANQARLLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAEAKAAAGARQSEIARLVGQHRDLISAKVRGNTRLPDNLAGNPEVRCLVRLLPTGEVQS HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCE VRVTRSSGNPAYDDAVKRAIEKSSPLPLPADRDARAEFVPELSFVHRPKE EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA