| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318198
Identifier: 74318198
GI number: 74318198
Start: 2263034
End: 2264179
Strand: Reverse
Name: 74318198
Synonym: Tbd_2180
Alternate gene names: NA
Gene position: 2264179-2263034 (Counterclockwise)
Preceding gene: 74318199
Following gene: 74318197
Centisome position: 77.81
GC content: 63.44
Gene sequence:
>1146_bases ATGAATAAGAAACTTTTTGCCGCCGTGTCGGCTGCATTGGCGGGCTTTGCCGCGAATGCTCACGCGACCAACGGCGACCA GATGCTCGGCGTCACCGCGACCCAGTGGGGCATGGGCGGCGCCATCGTCGCCGCGCCCCAGGACGCGGCCACTCTGCTGT ACAACCCGGCGGGCCTCGCCACGCTCGGCATCAAGGACGTGCGCTTCGACATGGGCGTCGGCGTGCTCAACCCGCCGCGC AAGGTCAACGGCCAGGACAGCGATTCCGATTACTACCTAATGCCGGCGGGGGCGGTTGCGTTCAACGTCGACGACAAGCT GTTTCTGGGCCTCAACATGGGCGGCGTTTCCGGCAGCGGCGTCGATTTTGCCGACGTGCGGCCCTTGCTCGCGGGCACGC AGGCCGTGGTCACGACCAAGCAGTCCTACAAGATCGCCCCGGGCTTCGCCTACCGGTTCAGCGACCGGCTTGCGCTCGGG GCCGCGCTGCAGATCGGCTATCAGAGCCTGGCGATCCACAACAACGCCTTCACCCTGCCGCAGACCCAGGTCTACGGCGT CGGCATGAACGCGGGCGTGATCTATAAGTTCAACGAGGCTGTGCAGCTCGGCGCGAGCTGGACCAGCAAGACCAGCATGG ACGAGTTCCAGTGGAACACCACCGCCGGCCCTTACAGCATGACGCTCGACATGCCGCAGGTCGTCGCGCTCGGCGTCGCC TTCCGGCCCATGCCGGGCTTGCTGATCGAGGCCGACGTGAAGCGCATCGGCTTCCAGGACGTGCTGGATCGAGTCCCCTT CGAGACCCCCGGCGGCGCGAGCACGATGAATTTCGGCTGGGACGACCAGACCGTTTATGCGATCGGCGTGCAGAAGCAGA TCAACGACAAGACGACCGTGCGCGCGGGCTTCAACTACGGCAAATCGCCGATCGGTGAGGAAGACGTCGACAACAACATC GGCTCGCTGGCGATCACCGAGAAACATCTCTCGCTCGGCATCACGCGCGAATTCAGCGACAAGGTGTCCGGCTCGTTGGC CTATACCCGCGCTTTCCATAACGAGATCACCTCGAATACGGGAAGCAACACCACGATCGAGCTCGAGCAGAACATCGTCA ATCTGCAGGTGAGTTACAAGTACTGA
Upstream 100 bases:
>100_bases GCGTCGCCTGTCATCAGAAATTCCGCGGCACGCCGGGCGTGTCGTCGAATCTGCTGAGCCCGGTTCGGAAATAACCCACC CCTGATCGAGGAGACTGAAT
Downstream 100 bases:
>100_bases GCGGTGCGCCGGCTCCGGCCGGCCTCCGCGCATTTCCCGCCCCCCACGGGGCTTTTCACTCGGAGGTTCTCATGACCGTA GACCGTATCGTGCACCTGAT
Product: long-chain fatty acid ABC transporter
Products: NA
Alternate protein names: Aromatic Hydrocarbon Degradation Protein; Long-Chain Fatty Acid ABC Transporter; Transporter Protein; Fatty Acid And Hydrocarbon Transporter; Fatty Acid/Hydrocarbon Transporter; OMPP1/FadL/dX Family Outer Membrane Protein
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MNKKLFAAVSAALAGFAANAHATNGDQMLGVTATQWGMGGAIVAAPQDAATLLYNPAGLATLGIKDVRFDMGVGVLNPPR KVNGQDSDSDYYLMPAGAVAFNVDDKLFLGLNMGGVSGSGVDFADVRPLLAGTQAVVTTKQSYKIAPGFAYRFSDRLALG AALQIGYQSLAIHNNAFTLPQTQVYGVGMNAGVIYKFNEAVQLGASWTSKTSMDEFQWNTTAGPYSMTLDMPQVVALGVA FRPMPGLLIEADVKRIGFQDVLDRVPFETPGGASTMNFGWDDQTVYAIGVQKQINDKTTVRAGFNYGKSPIGEEDVDNNI GSLAITEKHLSLGITREFSDKVSGSLAYTRAFHNEITSNTGSNTTIELEQNIVNLQVSYKY
Sequences:
>Translated_381_residues MNKKLFAAVSAALAGFAANAHATNGDQMLGVTATQWGMGGAIVAAPQDAATLLYNPAGLATLGIKDVRFDMGVGVLNPPR KVNGQDSDSDYYLMPAGAVAFNVDDKLFLGLNMGGVSGSGVDFADVRPLLAGTQAVVTTKQSYKIAPGFAYRFSDRLALG AALQIGYQSLAIHNNAFTLPQTQVYGVGMNAGVIYKFNEAVQLGASWTSKTSMDEFQWNTTAGPYSMTLDMPQVVALGVA FRPMPGLLIEADVKRIGFQDVLDRVPFETPGGASTMNFGWDDQTVYAIGVQKQINDKTTVRAGFNYGKSPIGEEDVDNNI GSLAITEKHLSLGITREFSDKVSGSLAYTRAFHNEITSNTGSNTTIELEQNIVNLQVSYKY >Mature_381_residues MNKKLFAAVSAALAGFAANAHATNGDQMLGVTATQWGMGGAIVAAPQDAATLLYNPAGLATLGIKDVRFDMGVGVLNPPR KVNGQDSDSDYYLMPAGAVAFNVDDKLFLGLNMGGVSGSGVDFADVRPLLAGTQAVVTTKQSYKIAPGFAYRFSDRLALG AALQIGYQSLAIHNNAFTLPQTQVYGVGMNAGVIYKFNEAVQLGASWTSKTSMDEFQWNTTAGPYSMTLDMPQVVALGVA FRPMPGLLIEADVKRIGFQDVLDRVPFETPGGASTMNFGWDDQTVYAIGVQKQINDKTTVRAGFNYGKSPIGEEDVDNNI GSLAITEKHLSLGITREFSDKVSGSLAYTRAFHNEITSNTGSNTTIELEQNIVNLQVSYKY
Specific function: Unknown
COG id: COG2067
COG function: function code I; Long-chain fatty acid transport protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40660; Mature: 40660
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLFAAVSAALAGFAANAHATNGDQMLGVTATQWGMGGAIVAAPQDAATLLYNPAGLA CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCCEE TLGIKDVRFDMGVGVLNPPRKVNGQDSDSDYYLMPAGAVAFNVDDKLFLGLNMGGVSGSG EECEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEECCCCCCC VDFADVRPLLAGTQAVVTTKQSYKIAPGFAYRFSDRLALGAALQIGYQSLAIHNNAFTLP CCHHHCCHHHCCCEEEEEECCCEEECCCEEEEECCCHHEHHHHHCCCEEEEEECCEEECC QTQVYGVGMNAGVIYKFNEAVQLGASWTSKTSMDEFQWNTTAGPYSMTLDMPQVVALGVA CCEEEEECCCCCEEEEECCCEEECCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHCEE FRPMPGLLIEADVKRIGFQDVLDRVPFETPGGASTMNFGWDDQTVYAIGVQKQINDKTTV ECCCCCEEEECCHHHCCHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEE RAGFNYGKSPIGEEDVDNNIGSLAITEKHLSLGITREFSDKVSGSLAYTRAFHNEITSNT EECCCCCCCCCCCCHHCCCCCEEEEEEEHHEEEEEHHHHHHHCCCCHHHHHHHHHHHCCC GSNTTIELEQNIVNLQVSYKY CCCEEEEEECCEEEEEEEEEC >Mature Secondary Structure MNKKLFAAVSAALAGFAANAHATNGDQMLGVTATQWGMGGAIVAAPQDAATLLYNPAGLA CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCCEE TLGIKDVRFDMGVGVLNPPRKVNGQDSDSDYYLMPAGAVAFNVDDKLFLGLNMGGVSGSG EECEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEECCCCCCC VDFADVRPLLAGTQAVVTTKQSYKIAPGFAYRFSDRLALGAALQIGYQSLAIHNNAFTLP CCHHHCCHHHCCCEEEEEECCCEEECCCEEEEECCCHHEHHHHHCCCEEEEEECCEEECC QTQVYGVGMNAGVIYKFNEAVQLGASWTSKTSMDEFQWNTTAGPYSMTLDMPQVVALGVA CCEEEEECCCCCEEEEECCCEEECCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHCEE FRPMPGLLIEADVKRIGFQDVLDRVPFETPGGASTMNFGWDDQTVYAIGVQKQINDKTTV ECCCCCEEEECCHHHCCHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCEEE RAGFNYGKSPIGEEDVDNNIGSLAITEKHLSLGITREFSDKVSGSLAYTRAFHNEITSNT EECCCCCCCCCCCCHHCCCCCEEEEEEEHHEEEEEHHHHHHHCCCCHHHHHHHHHHHCCC GSNTTIELEQNIVNLQVSYKY CCCEEEEEECCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA