Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318078

Identifier: 74318078

GI number: 74318078

Start: 2150294

End: 2152018

Strand: Reverse

Name: 74318078

Synonym: Tbd_2060

Alternate gene names: NA

Gene position: 2152018-2150294 (Counterclockwise)

Preceding gene: 74318079

Following gene: 74318077

Centisome position: 73.96

GC content: 65.8

Gene sequence:

>1725_bases
ATGGCTAAAACGCTCAACGTCGTGCTGTGCTGGCACATGCATCAGCCGTATTACCGCGAAGGGCTCTCCGGCGCCTATCA
CCTGCCCTGGGTCTATCTGCACGGGATCAAGGACTACAGCGACATGGCTGCGCACCTCGAGCGCCATCCGAAGATGCGTG
CCGTCGTGAATTTTGCCCCGGTCCTGCTCGAGCAGCTCGACGACTACGCGCACCAGCTCGAACGTCTGCTGAAGCACGGA
ACGCCGACCCAGGACCGGATGCTGAACCTGCTCGCCGGCGTCGAGCCCGTCCCGACCGACCTCGACGGCCGGCTGCGCGT
GGTCCAGGACTGTCAGCGCTGCCACGCACCACGCATGATCGACCCTTACCCGCCGTTCCGCGCCCTGCTCGACATGATCG
GCGCGACCGACGCCGGGGACGGCGCGGCGTCCGGCCTGCACTGGCACCTCGGCTATCTCTCCGAGCAGTATTTTCTCGAT
CTCTTGACCTGGTATCACCTCGCCTGGCTCGGGCATTCGCTGCGCGCGTTGCCGCTCGTGCAGCGCCTGATGGTCGAGGA
AAGGGACTTCTCCGAAGCCGACCGCCGCGAACTCCTGCGCCTGATCCAGCACTGCATGGCCGGCCTGATTCCGCGCTACC
GTGCGCTCGCGGAAAGAGGGCAGGTCGAACTGTCGATGACGCCCTATGGGCACCCGATCCTGCCCTTGCTCAATGACTTC
GCCAACATGCGCGACGCGCTGCCAGACGCCCCCGCTCCCGAGGCAACGGCCTATCCGGGCGGCGCCGAGCGCGCGCAGTG
GCACCTGCAGCGCGGTATCGAGGTGTTCGAGCACTATTTCGGCAGACGGCCTTCGGGCGTATGGCTGTCGGAAGGCGGGG
TGAGCGAGGACGCGCTGGCGCAGCTCGACGAATTCGGCTTCACCTGGACCGCGTCGGGGGAGGGCGTGTGGCGCCATAGT
TGCATCAAGTCGGGCGCGTCCGAAGAAGACATCCAGACCAAGCGCACGCTGTTCGCGCCGGCGCAGGTCGACGGCTTCAA
GCCGCGCGTGTTTTTCCGCGACGATGGCTTGTCGGATCTGATCGGTTTCAAGTACAGCGACTGGCACGCCGACGATGCCA
TCGGCGACTTCGTCCACCATCTCGAGAATATCGCGACCTACCTCGGCAAGGAGGCCAAGCATCATGTCGTGTCGATCATT
CTCGACGGCGAAAACGCGTGGGAGTACTACCCGGACAACGGCCACCATTTTCTCGAAGGGCTCTATGGCGCGCTGTCGCG
CCATCGCACGCTCGACGTCAGCACCTTCGCCGAGCAGGCCGAAGCGGCCACCAGCCAGCCGATGAAGCAGCTCGCCGCGG
GCAGCTGGGTCTACGGCAGCTTCTCGACCTGGATCGGCTCGGAGGACAAGAACCGCGGCTGGGACTATCTCGTGGCGGCG
AAGCGCGCCTACGACCACGCGGTGATGAACAACGATCTCGACGCCGAGGCGCTCGCGCTGGCGACGCGGCAACTCGCCGT
GTGCGAAGGGTCGGACTGGTTCTGGTGGTTCGGCGACTACAACCCGGCGAGCAGCGTCAGCGACTTCGAACAGCTCTACC
GCACGCAGCTGCGCGAACTGTATCGCCTGATCGGGGTGGCGGCGCCGTCCGAACTCGACCAGACGTTGTCGACCGGCGGC
GGCTGGGCCGACAACGCCGGCACCATGCGCCGCAACGTCGGCTGA

Upstream 100 bases:

>100_bases
GAAGACGCCAAGCGCTTTCACGTCACGCCCGAAGGCATCGTGCTGGTGACGCCCCGCATGCTCGGGCAGAACATCTACGC
CCGCTGGGAAGACGAATACG

Downstream 100 bases:

>100_bases
GCCCCAACCGGAGAACCGCTCCCATGAACTTTTCCGAGCGCCGCGCCGGCATCCTGCTGCATCCGACCTCGCTGCCTTCG
GGCACCTTCGCGGACGCCGA

Product: glycosyl hydrolase family protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Amylopullulanase; Glycoside Hydrolase; Glycosy Hydrolase Family Protein; Pullulanase; Glycosyl Hydrolase Family; Family; Alpha-Amylase/Alpha-Mannosidase; Pullulanase Glycoside Hydrolase Family; Alpha-Dextran Endo-1 6-Alpha-Glucosidase; Alpha-Mannosidase; Amylopullulanase Related Protein

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHG
TPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLD
LLTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF
ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHS
CIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSII
LDGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA
KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGG
GWADNAGTMRRNVG

Sequences:

>Translated_574_residues
MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHG
TPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLD
LLTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF
ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHS
CIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSII
LDGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA
KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGG
GWADNAGTMRRNVG
>Mature_573_residues
AKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHGT
PTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDL
LTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDFA
NMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHSC
IKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIIL
DGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAAK
RAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGGG
WADNAGTMRRNVG

Specific function: Unknown

COG id: COG1449

COG function: function code G; Alpha-amylase/alpha-mannosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64841; Mature: 64709

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAP
CCCCEEEEEEEECCCHHHHHCCCCCEECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHH
VLLEQLDDYAHQLERLLKHGTPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC
DPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDLLTWYHLAWLGHSLRALPLV
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALA
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHH
QLDEFGFTWTASGEGVWRHSCIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDL
HHHHCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCEEEECCCCHHHH
IGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIILDGENAWEYYPDNGHHFLEG
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCCCCCCCCCCHHHHHH
LYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCHHHHHH
KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLREL
HHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
YRLIGVAAPSELDQTLSTGGGWADNAGTMRRNVG
HHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAP
CCCEEEEEEEECCCHHHHHCCCCCEECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHH
VLLEQLDDYAHQLERLLKHGTPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC
DPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDLLTWYHLAWLGHSLRALPLV
CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALA
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHH
QLDEFGFTWTASGEGVWRHSCIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDL
HHHHCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCEEEECCCCHHHH
IGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIILDGENAWEYYPDNGHHFLEG
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCCCCCCCCCCHHHHHH
LYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCHHHHHH
KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLREL
HHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
YRLIGVAAPSELDQTLSTGGGWADNAGTMRRNVG
HHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA