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The map label for this gene is psd

Identifier: 74318006

GI number: 74318006

Start: 2078862

End: 2079488

Strand: Reverse

Name: psd

Synonym: Tbd_1988

Alternate gene names: 74318006

Gene position: 2079488-2078862 (Counterclockwise)

Preceding gene: 74318007

Following gene: 74318005

Centisome position: 71.46

GC content: 64.59

Gene sequence:

>627_bases
ATGAAAAATCCCATCATCGCCCGCGAGGGCTGGCTCGTTCTGCTGGCGGCGTTCGGCGCCGCGCTGATCGCTACCTGGCT
CATCGGCTGGTGGTCGGTGCCGTTCTGGATCTGGGCGGTGTTCGCCCTGCAGTTCTTCCGCGATCCCGCGCGCGTGCCGC
CCGCCGACGCGGACGCCGTGATCTCGCCGGCCGATGGTCGTATCGTCTCGGTCGAGAAGGTGCGTGATCCTCACCTCGAA
CGCGACGCGCTCAAGATCAGCGTGTTCATGAACGTCTTCAACGTCCATTCCAACAAGAGTCCGGTCGACGGCGAGATCAA
GGCGCGCTGGTATACCCCCGGCAGCTTCGTCAATGCCGACCTCGACAAGGCGTCGACTGAGAACGAGCGCAACGCGCTGT
GGATCCAGAGCGAACGCGGCGATGTCGTCGCCGTGCAGATCGCTGGCCTGATCGCGCGCCGCATCCTTTGTTACGTACGG
ACAGGCGACCGACTCCTGCGTGGCCAGCGCTACGGCTTCATCCGCTTCGGCTCGCGGGTCGACGTCTATCTTCCGACGAG
CGCGCGCGCCGCGGTCTCGATTGGTCAGAAAGTGACCGGCGGGCGTACCATACTCGCTCGCTTTTAG

Upstream 100 bases:

>100_bases
GCAGGGGTCAGGGGTCGGGGATCTGGGATCAGGGGGTGTGCGGCTGCGCCGGCCTCTTCCCCCCGGATCCCTGAATCCTG
AATCCTGAACCCTGAATCCT

Downstream 100 bases:

>100_bases
CGCGGCGCGGCCTTCACGCGCGCCCCACCTAGCGGTCCCGGTTTGTCGCGGCAGCACCGCCGCGATATTTGTGTCAACAC
GCCCTGGGTTCGTCATGCTC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKNPIIAREGWLVLLAAFGAALIATWLIGWWSVPFWIWAVFALQFFRDPARVPPADADAVISPADGRIVSVEKVRDPHLE
RDALKISVFMNVFNVHSNKSPVDGEIKARWYTPGSFVNADLDKASTENERNALWIQSERGDVVAVQIAGLIARRILCYVR
TGDRLLRGQRYGFIRFGSRVDVYLPTSARAAVSIGQKVTGGRTILARF

Sequences:

>Translated_208_residues
MKNPIIAREGWLVLLAAFGAALIATWLIGWWSVPFWIWAVFALQFFRDPARVPPADADAVISPADGRIVSVEKVRDPHLE
RDALKISVFMNVFNVHSNKSPVDGEIKARWYTPGSFVNADLDKASTENERNALWIQSERGDVVAVQIAGLIARRILCYVR
TGDRLLRGQRYGFIRFGSRVDVYLPTSARAAVSIGQKVTGGRTILARF
>Mature_208_residues
MKNPIIAREGWLVLLAAFGAALIATWLIGWWSVPFWIWAVFALQFFRDPARVPPADADAVISPADGRIVSVEKVRDPHLE
RDALKISVFMNVFNVHSNKSPVDGEIKARWYTPGSFVNADLDKASTENERNALWIQSERGDVVAVQIAGLIARRILCYVR
TGDRLLRGQRYGFIRFGSRVDVYLPTSARAAVSIGQKVTGGRTILARF

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_THIDA (Q3SHE5)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315746.1
- STRING:   Q3SHE5
- GeneID:   3671740
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_1988
- NMPDR:   fig|292415.3.peg.2104
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   TDEN292415:TBD_1988-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23224; Mature: 23224

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPIIAREGWLVLLAAFGAALIATWLIGWWSVPFWIWAVFALQFFRDPARVPPADADAV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
ISPADGRIVSVEKVRDPHLERDALKISVFMNVFNVHSNKSPVDGEIKARWYTPGSFVNAD
EECCCCCEEEEHHCCCCCCCHHHEEHEEEEEHHHCCCCCCCCCCEEEEEEECCCCCEECC
LDKASTENERNALWIQSERGDVVAVQIAGLIARRILCYVRTGDRLLRGQRYGFIRFGSRV
CCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHEEEECCCHHHCCCCCEEEEECCEE
DVYLPTSARAAVSIGQKVTGGRTILARF
EEEECCCCHHHHHCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKNPIIAREGWLVLLAAFGAALIATWLIGWWSVPFWIWAVFALQFFRDPARVPPADADAV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
ISPADGRIVSVEKVRDPHLERDALKISVFMNVFNVHSNKSPVDGEIKARWYTPGSFVNAD
EECCCCCEEEEHHCCCCCCCHHHEEHEEEEEHHHCCCCCCCCCCEEEEEEECCCCCEECC
LDKASTENERNALWIQSERGDVVAVQIAGLIARRILCYVRTGDRLLRGQRYGFIRFGSRV
CCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHEEEECCCHHHCCCCCEEEEECCEE
DVYLPTSARAAVSIGQKVTGGRTILARF
EEEECCCCHHHHHCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA