| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is cbbP [H]
Identifier: 74317973
GI number: 74317973
Start: 2049151
End: 2050131
Strand: Reverse
Name: cbbP [H]
Synonym: Tbd_1955
Alternate gene names: 74317973
Gene position: 2050131-2049151 (Counterclockwise)
Preceding gene: 74317975
Following gene: 74317972
Centisome position: 70.46
GC content: 65.34
Gene sequence:
>981_bases ATGTCCCGTCAGCACCCGATCGTCGCTGTCACCGGCTCGTCCGGTGCCGGCCTGTCCACGATACGCCACGCGTTCAAGTT CATTTTCGAGCGCCTGAACATCAAACCCGCGCTCGTTCATGGCGACGGCTTCCGGCGGTATACCGACCGCCAGTTCACGG CCTTGCTCGACGAGGCGCGGCGTAGCGGCCGCAAGATTTCCTGGTTCGGCCCGGAGTGCAATCATTTCCAGGAGCTCGAA TCGTTTTTTCGTACCTACGGCGAATGCGGCAGCGGGGTGTATCGCCAGTACGCGCACAACGCCGAACACGGCGGGGAACT CGGCGTGCCGGCGGGCGAGTTCACGCCCTGGGCGCCGCTGCCGCAAGGCAGCGATCTGCTGTTCTACGAGGGGCAGCACG GCGGCCTGGTCGCCAACACCTGGACGCGCCGCAAGGTCGACGCGCGTCATTTTCCGCCCGGCATCGACCGCCGCGTCGGC CGCCCCGGCATCGACGTAGCTCGGCACGTGGACCTGCTGATCGGCGTGGTGCCCGCGATCAACCTCGAGTGGATACAGAA GATCCACCGCGACTGCAAGAACGGCTGCACGCCCGAAGAAGCGGTGGAAACGATCCTCCGCCGCATGGACGACTACATCC ATTACATCGTCCCCCAGTTCGGCCTGACCGACATCAACATCCAGCGCATGCCGCTGGTCGACACCTCGGATCCCTTCATC GCGCGCGACGTGCCCCTGCCCGACGAATCGCTGTGCGTGATCCATTTCCGCGACCGCGAGCGCCACGATTTTCGCGCCTT GCTCAAGCGCATCCCCGACGCCTACATGTCGCGGCCGACCACGATGGTGGTGTCGAGCAACAATCTGCGCCTTGCGCTTG CCGCGATTTGCAGCCCGATCCTGGCGGGTTTCATGGAAGCCCGCGGTCCCGCCGCGGCGGGATCAAGGGCGCCAGACCCG TGCGTACCATCGGAGCTTTGA
Upstream 100 bases:
>100_bases AGTCCGGCTCCGCCTTCGGCCGGATGCTCCTTCTTTGGGGGACGGAGGGGTAAACTTTCAGTCCCGCTGCCTTCCGGCCA ACCTGGGGGAATGACCGACC
Downstream 100 bases:
>100_bases AAATCGACGGACCTGCAGGTCGCGGTTGAGGGCCCCCCGGTCCGATCGCGGAAACGCTGCGATGGACGATTGCCCGCTAA ACGCGATCCCGTTGTCCCCC
Product: phosphoribulokinase-like protein
Products: NA
Alternate protein names: PRK; PRKase; Phosphopentokinase [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSRQHPIVAVTGSSGAGLSTIRHAFKFIFERLNIKPALVHGDGFRRYTDRQFTALLDEARRSGRKISWFGPECNHFQELE SFFRTYGECGSGVYRQYAHNAEHGGELGVPAGEFTPWAPLPQGSDLLFYEGQHGGLVANTWTRRKVDARHFPPGIDRRVG RPGIDVARHVDLLIGVVPAINLEWIQKIHRDCKNGCTPEEAVETILRRMDDYIHYIVPQFGLTDINIQRMPLVDTSDPFI ARDVPLPDESLCVIHFRDRERHDFRALLKRIPDAYMSRPTTMVVSSNNLRLALAAICSPILAGFMEARGPAAAGSRAPDP CVPSEL
Sequences:
>Translated_326_residues MSRQHPIVAVTGSSGAGLSTIRHAFKFIFERLNIKPALVHGDGFRRYTDRQFTALLDEARRSGRKISWFGPECNHFQELE SFFRTYGECGSGVYRQYAHNAEHGGELGVPAGEFTPWAPLPQGSDLLFYEGQHGGLVANTWTRRKVDARHFPPGIDRRVG RPGIDVARHVDLLIGVVPAINLEWIQKIHRDCKNGCTPEEAVETILRRMDDYIHYIVPQFGLTDINIQRMPLVDTSDPFI ARDVPLPDESLCVIHFRDRERHDFRALLKRIPDAYMSRPTTMVVSSNNLRLALAAICSPILAGFMEARGPAAAGSRAPDP CVPSEL >Mature_325_residues SRQHPIVAVTGSSGAGLSTIRHAFKFIFERLNIKPALVHGDGFRRYTDRQFTALLDEARRSGRKISWFGPECNHFQELES FFRTYGECGSGVYRQYAHNAEHGGELGVPAGEFTPWAPLPQGSDLLFYEGQHGGLVANTWTRRKVDARHFPPGIDRRVGR PGIDVARHVDLLIGVVPAINLEWIQKIHRDCKNGCTPEEAVETILRRMDDYIHYIVPQFGLTDINIQRMPLVDTSDPFIA RDVPLPDESLCVIHFRDRERHDFRALLKRIPDAYMSRPTTMVVSSNNLRLALAAICSPILAGFMEARGPAAAGSRAPDPC VPSEL
Specific function: Unknown
COG id: COG3954
COG function: function code C; Phosphoribulokinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoribulokinase family [H]
Homologues:
Organism=Escherichia coli, GI2367214, Length=309, Percent_Identity=44.336569579288, Blast_Score=263, Evalue=1e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006082 - InterPro: IPR006083 [H]
Pfam domain/function: PF00485 PRK [H]
EC number: =2.7.1.19 [H]
Molecular weight: Translated: 36551; Mature: 36420
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQHPIVAVTGSSGAGLSTIRHAFKFIFERLNIKPALVHGDGFRRYTDRQFTALLDEAR CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH RSGRKISWFGPECNHFQELESFFRTYGECGSGVYRQYAHNAEHGGELGVPAGEFTPWAPL HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC PQGSDLLFYEGQHGGLVANTWTRRKVDARHFPPGIDRRVGRPGIDVARHVDLLIGVVPAI CCCCCEEEEECCCCCEEECCCHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCC NLEWIQKIHRDCKNGCTPEEAVETILRRMDDYIHYIVPQFGLTDINIQRMPLVDTSDPFI CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCE ARDVPLPDESLCVIHFRDRERHDFRALLKRIPDAYMSRPTTMVVSSNNLRLALAAICSPI EECCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHCCCCEEEEECCCCCHHHHHHHHHH LAGFMEARGPAAAGSRAPDPCVPSEL HHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRQHPIVAVTGSSGAGLSTIRHAFKFIFERLNIKPALVHGDGFRRYTDRQFTALLDEAR CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH RSGRKISWFGPECNHFQELESFFRTYGECGSGVYRQYAHNAEHGGELGVPAGEFTPWAPL HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC PQGSDLLFYEGQHGGLVANTWTRRKVDARHFPPGIDRRVGRPGIDVARHVDLLIGVVPAI CCCCCEEEEECCCCCEEECCCHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCC NLEWIQKIHRDCKNGCTPEEAVETILRRMDDYIHYIVPQFGLTDINIQRMPLVDTSDPFI CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCE ARDVPLPDESLCVIHFRDRERHDFRALLKRIPDAYMSRPTTMVVSSNNLRLALAAICSPI EECCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHCCCCEEEEECCCCCHHHHHHHHHH LAGFMEARGPAAAGSRAPDPCVPSEL HHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA