| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74317755
Identifier: 74317755
GI number: 74317755
Start: 1822358
End: 1824019
Strand: Reverse
Name: 74317755
Synonym: Tbd_1737
Alternate gene names: NA
Gene position: 1824019-1822358 (Counterclockwise)
Preceding gene: 74317756
Following gene: 74317754
Centisome position: 62.69
GC content: 68.77
Gene sequence:
>1662_bases ATGCTGCGACTGACTGAACTCAAACTCCCGCTCGACCATCCGCCCGCGGCCTTGCGCGCGGCGATCCTGCAGCGGCTCGG CATCGCCGACGACGAACTTCTCGGCGTCAGCATCTTCAAGCGCAGCTACGACGCGCGCAAGAAGCACGCGCTGCTGCTCG TCTATGCGGTCGACGTCGAGGTGAGGAACGAGGCCGCGTTGCTGAAGAAATTCCGCAACGACAGCCATCTCGCGCCGACA CCCGACATGCGCTACCACGTCGTCGGCCACGCGCCGCGGGACCTGGAGGAGCGTCCGATCGTCGTCGGCTTCGGCCCTTG CGGCATCTTCGCGGCGCTCGTGCTGGCGCAGATGGGTTTTCGGCCGATCGTGCTCGAGCGCGGCAAGGCGGTGCGCGAGC GCACGCAGGACACTTGGGGCCTGTGGCGCAAGAAGGTGCTCAATCCCGAATCCAACGTGCAGTTCGGCGAGGGCGGGGCG GGCACCTTCTCCGACGGCAAGCTCTACAGCCAGGTCAAGGACCCCAAGCACTACGGGCGCAAGGTGCTGAGTGAATTCGT CAAGGCCGGTGCGCCGGAAGAAATCCTCTATGTGTCGAAGCCGCACATCGGCACCTTCCGTCTGGTCGGCATGGTCGAGA CGATGCGGCGCGAAATCGAAGCGCTCGGCGGCGAGATCCGCTTCCAGCAGCACGTGACCGACCTCGTGCTCGAGGACGGC GCGGCGGGCCGCCGCATCACCGGCGTCATGCTCGCGAACGGGGAAACGCTTGCGAGCCGTCATGTGGTCCTCGCACTCGG ACACAGCGCCCGCGACACCTTTTCGATGCTGCACGCGCGCGGCGTGCATATGGAAGCCAAGCCGTTCTCGATCGGCTTTC GCATCGAGCATCCGCAGTCGCTGATCGACCGCGCGCGGCTCGGGCCCAACGCCGGCAATCCGCTGCTCGGCGCGGCCGAC TACAAGCTCGTGCACCATGCGACGAACGGCCGCTCGGTCTACAGCTTCTGCATGTGCCCGGGCGGCACCGTCGTCGCCGC GACCTCGGAGCCGAACTGCGTCGTGACCAACGGCATGAGCCAGTACTCGCGCAACGAGCGCAACGCCAACGCAGGCATCG TCGTCGGCATCACGCCGGCCGATTTCCCGGGCGACGACCCGCTCGCCGGCATCGCACTGCAGCGGAAGCTGGAGGCCCAC GCGTTCGCGCTCGGCGGCGGCGACTACAGCGCGCCGGGCCAGCTCGTCGGCGACTTCCTCGCGGGCCGGCCCTCGGCGGC GCTCGGCAGCGTCGAGCCCTCGTACCAGCCGGGCGTGCGTCTGACCGATCTCGCGACCGCGCTTCCCGACTATGCGATCG CGGCGATCCGCGAGGCGCTGCCCGCCTTCGACAGGCAGATCAAGGGTTTCGCGATGCAGGACGCGGTGTTGACCGGCGTC GAGACGCGGACCTCGTCGCCGCTACGCGTCACCCGCGGCGGCGACCTGCAAAGCCTCAACGTGCGCGGCCTGTTCCCGGC GGGCGAGGGCGCAGGCTACGCGGGTGGCATTCTCTCTGCAGGCATCGACGGCATCCGCGCCGCCGAAGCGGTCGCCCGCG ATTACCTCGGCCAGGCGCCCGAGGCGCCTGCGCCGACTGCGAGCGCTCCCCTCATCTACTGA
Upstream 100 bases:
>100_bases CTCGACTGGGAAGCGCCGACTGGCGGCTACCTGCTGAGCGCGTGCTTCGCCACGGGACGCGCCGCGGGGCAGGGCGCCCT GAATTACCTGAGTACCCTTC
Downstream 100 bases:
>100_bases CCGCGGCGCCGGCGGCGCGCTCTCGACCGCCGCACGGCGGGGCGCTTTTTCTGCCCCTGTGCCGCGCCGTGCACTTTTCT CACTCGTGCGCCGCGCCCCG
Product: putative FAD-dependent dehydrogenase
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MLRLTELKLPLDHPPAALRAAILQRLGIADDELLGVSIFKRSYDARKKHALLLVYAVDVEVRNEAALLKKFRNDSHLAPT PDMRYHVVGHAPRDLEERPIVVGFGPCGIFAALVLAQMGFRPIVLERGKAVRERTQDTWGLWRKKVLNPESNVQFGEGGA GTFSDGKLYSQVKDPKHYGRKVLSEFVKAGAPEEILYVSKPHIGTFRLVGMVETMRREIEALGGEIRFQQHVTDLVLEDG AAGRRITGVMLANGETLASRHVVLALGHSARDTFSMLHARGVHMEAKPFSIGFRIEHPQSLIDRARLGPNAGNPLLGAAD YKLVHHATNGRSVYSFCMCPGGTVVAATSEPNCVVTNGMSQYSRNERNANAGIVVGITPADFPGDDPLAGIALQRKLEAH AFALGGGDYSAPGQLVGDFLAGRPSAALGSVEPSYQPGVRLTDLATALPDYAIAAIREALPAFDRQIKGFAMQDAVLTGV ETRTSSPLRVTRGGDLQSLNVRGLFPAGEGAGYAGGILSAGIDGIRAAEAVARDYLGQAPEAPAPTASAPLIY
Sequences:
>Translated_553_residues MLRLTELKLPLDHPPAALRAAILQRLGIADDELLGVSIFKRSYDARKKHALLLVYAVDVEVRNEAALLKKFRNDSHLAPT PDMRYHVVGHAPRDLEERPIVVGFGPCGIFAALVLAQMGFRPIVLERGKAVRERTQDTWGLWRKKVLNPESNVQFGEGGA GTFSDGKLYSQVKDPKHYGRKVLSEFVKAGAPEEILYVSKPHIGTFRLVGMVETMRREIEALGGEIRFQQHVTDLVLEDG AAGRRITGVMLANGETLASRHVVLALGHSARDTFSMLHARGVHMEAKPFSIGFRIEHPQSLIDRARLGPNAGNPLLGAAD YKLVHHATNGRSVYSFCMCPGGTVVAATSEPNCVVTNGMSQYSRNERNANAGIVVGITPADFPGDDPLAGIALQRKLEAH AFALGGGDYSAPGQLVGDFLAGRPSAALGSVEPSYQPGVRLTDLATALPDYAIAAIREALPAFDRQIKGFAMQDAVLTGV ETRTSSPLRVTRGGDLQSLNVRGLFPAGEGAGYAGGILSAGIDGIRAAEAVARDYLGQAPEAPAPTASAPLIY >Mature_553_residues MLRLTELKLPLDHPPAALRAAILQRLGIADDELLGVSIFKRSYDARKKHALLLVYAVDVEVRNEAALLKKFRNDSHLAPT PDMRYHVVGHAPRDLEERPIVVGFGPCGIFAALVLAQMGFRPIVLERGKAVRERTQDTWGLWRKKVLNPESNVQFGEGGA GTFSDGKLYSQVKDPKHYGRKVLSEFVKAGAPEEILYVSKPHIGTFRLVGMVETMRREIEALGGEIRFQQHVTDLVLEDG AAGRRITGVMLANGETLASRHVVLALGHSARDTFSMLHARGVHMEAKPFSIGFRIEHPQSLIDRARLGPNAGNPLLGAAD YKLVHHATNGRSVYSFCMCPGGTVVAATSEPNCVVTNGMSQYSRNERNANAGIVVGITPADFPGDDPLAGIALQRKLEAH AFALGGGDYSAPGQLVGDFLAGRPSAALGSVEPSYQPGVRLTDLATALPDYAIAAIREALPAFDRQIKGFAMQDAVLTGV ETRTSSPLRVTRGGDLQSLNVRGLFPAGEGAGYAGGILSAGIDGIRAAEAVARDYLGQAPEAPAPTASAPLIY
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 59263; Mature: 59263
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLTELKLPLDHPPAALRAAILQRLGIADDELLGVSIFKRSYDARKKHALLLVYAVDVE CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEE VRNEAALLKKFRNDSHLAPTPDMRYHVVGHAPRDLEERPIVVGFGPCGIFAALVLAQMGF ECHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC RPIVLERGKAVRERTQDTWGLWRKKVLNPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHCCHHHHHH KVLSEFVKAGAPEEILYVSKPHIGTFRLVGMVETMRREIEALGGEIRFQQHVTDLVLEDG HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCC AAGRRITGVMLANGETLASRHVVLALGHSARDTFSMLHARGVHMEAKPFSIGFRIEHPQS CCCCEEEEEEEECCCCHHCCEEEEEECCCCHHHHHHHHHCCCCEECCCEEEEEEECCHHH LIDRARLGPNAGNPLLGAADYKLVHHATNGRSVYSFCMCPGGTVVAATSEPNCVVTNGMS HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEECCHH QYSRNERNANAGIVVGITPADFPGDDPLAGIALQRKLEAHAFALGGGDYSAPGQLVGDFL HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHH AGRPSAALGSVEPSYQPGVRLTDLATALPDYAIAAIREALPAFDRQIKGFAMQDAVLTGV CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEHHHHHHCCC ETRTSSPLRVTRGGDLQSLNVRGLFPAGEGAGYAGGILSAGIDGIRAAEAVARDYLGQAP CCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCC EAPAPTASAPLIY CCCCCCCCCCCCC >Mature Secondary Structure MLRLTELKLPLDHPPAALRAAILQRLGIADDELLGVSIFKRSYDARKKHALLLVYAVDVE CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEE VRNEAALLKKFRNDSHLAPTPDMRYHVVGHAPRDLEERPIVVGFGPCGIFAALVLAQMGF ECHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHHCCC RPIVLERGKAVRERTQDTWGLWRKKVLNPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR CEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHCCHHHHHH KVLSEFVKAGAPEEILYVSKPHIGTFRLVGMVETMRREIEALGGEIRFQQHVTDLVLEDG HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCC AAGRRITGVMLANGETLASRHVVLALGHSARDTFSMLHARGVHMEAKPFSIGFRIEHPQS CCCCEEEEEEEECCCCHHCCEEEEEECCCCHHHHHHHHHCCCCEECCCEEEEEEECCHHH LIDRARLGPNAGNPLLGAADYKLVHHATNGRSVYSFCMCPGGTVVAATSEPNCVVTNGMS HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEECCHH QYSRNERNANAGIVVGITPADFPGDDPLAGIALQRKLEAHAFALGGGDYSAPGQLVGDFL HHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHH AGRPSAALGSVEPSYQPGVRLTDLATALPDYAIAAIREALPAFDRQIKGFAMQDAVLTGV CCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEHHHHHHCCC ETRTSSPLRVTRGGDLQSLNVRGLFPAGEGAGYAGGILSAGIDGIRAAEAVARDYLGQAP CCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCC EAPAPTASAPLIY CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]