| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is gltX
Identifier: 74317752
GI number: 74317752
Start: 1819182
End: 1820600
Strand: Direct
Name: gltX
Synonym: Tbd_1734
Alternate gene names: 74317752
Gene position: 1819182-1820600 (Clockwise)
Preceding gene: 74317748
Following gene: 74317757
Centisome position: 62.52
GC content: 67.02
Gene sequence:
>1419_bases ATGGCGCCTTTTTCACGCCCGCATCACCCCATGATCCGCACCCGCTTCGCCCCCTCCCCCACCGGCTACCTGCACATCGG CGGCGCGCGCACCGCGCTTTTCTCGTGGGCGTTCGCGCGTCATCACGGCGGGCAGTTCGTCCTGCGCATCGAGGACACCG ACATCGCACGCTCGACGCCCGAGGCCGTGCAGGCGATCCTCGACGGCATGGCGTGGCTCGATCTCAATCACGACGAAGGC CCGTTCTACCAGACCCAGCGCCTGTATCGCTACAAGGAAGTGATCGAGCAGATGCTGGCCAGCGGCGACGCCTATCACTG CTACTGCAGTACCGAAGAGCTCGACGAAATGCGCGAGGCGCAACGCGCGCGCGGCGAAAAGCCCCGCTACGACGGACGCT GGCGCCCCGAGCCCGGCAAGACCCTGCCGGTGCCGCCGTCGGGGGTGCAGCCCGTGGTGCGTTTCCGCAACCCGACCGAC GGAACGGTGGCGTGGAAGGATCTCGTCAAGGGTACGATCGAGTTCTCCAACGCCGAACTCGACGACCTCATCATCGCGCG CGCCGACGGCACGCCGACCTACAATTTCTGCGTCGTCGTCGACGACTGGGACATGCGGATCACGCACGTCATCCGCGGCG ACGACCACGTCAACAACACGCCGCGCCAGATCAACATCCTCAAGGCGCTCGGCGCGACCGTCCCCGAGTATGCCCACCTG TCGATGATCCTCGGCGACGACGGCACCAAGCTCTCCAAGCGCCACGGCGCGGTGTCGGTCATGCAGTACTTCGAGGAAGG CTATCTGCCCGAGGCGGTGATCAACTATCTCGCCCGCCTCGGCTGGTCTCATGGCGACGCGGAACTGTTCGACCGCGAGC AGTTCGTCGAGTGGTTCGACCTCGACCACATCACGCCGTCGGCCGCACAGTTCAACACCGAGAAGCTGCGCTGGCTCAAT CAGCAGTACATCAAGGCGGCCGACGACACCCGTCTGGCCGGCCTCGCGCGTCCCTTTCTGATCCGCAACGGCGCGACGCT CGACGATGGACCCGATCTCGCTGCGGTCTGTGCCCTGGTCAAGGAGCGGGCGGCAACGATCGAAGCGCTCGCCGACGCCG CGACGCTCTTCTACCGGGTCCTCCACCCGACGCCCGAGCTGCTCGCCCAGCACGTCACGGCCGAGGTGCGGCCGGCGCTC GCCGATCTCGCGACGCGCCTCGAAACGCTTGAATGGGAGCGTGGCGCGATCAGCGCGGCGTTCAAGGAGACGCTCGCCGC GCATGGGCTGAAGATGCCCAAGCTCGCGATGCCGGTGCGCGTGCTCGTGACCGGCGAACCGCAGACGCCGGCGATCGACG CGACACTCGAATTGCTCGGACGCGAAAAGGTCCTCGACCGCCTCAGGGCGGCGCTCTAG
Upstream 100 bases:
>100_bases AAGGCGATGCTCTACCGCTGAGCTAACTGCCCCGAAGCGGCGCGAATTAAACCACACCCGCGCCGGCGAGGTCAATTTAG CGGCGCGCCGATCCGGTAAA
Downstream 100 bases:
>100_bases CTCGCCACAAGCGGAAACGAATCCGCTATAATGCGCGCTGTTTTTCGCCGGCGTAGCTCAGTTGGTAGAGCAGCGCATTC GTAATGCGAAGGTCGTCAGT
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MAPFSRPHHPMIRTRFAPSPTGYLHIGGARTALFSWAFARHHGGQFVLRIEDTDIARSTPEAVQAILDGMAWLDLNHDEG PFYQTQRLYRYKEVIEQMLASGDAYHCYCSTEELDEMREAQRARGEKPRYDGRWRPEPGKTLPVPPSGVQPVVRFRNPTD GTVAWKDLVKGTIEFSNAELDDLIIARADGTPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALGATVPEYAHL SMILGDDGTKLSKRHGAVSVMQYFEEGYLPEAVINYLARLGWSHGDAELFDREQFVEWFDLDHITPSAAQFNTEKLRWLN QQYIKAADDTRLAGLARPFLIRNGATLDDGPDLAAVCALVKERAATIEALADAATLFYRVLHPTPELLAQHVTAEVRPAL ADLATRLETLEWERGAISAAFKETLAAHGLKMPKLAMPVRVLVTGEPQTPAIDATLELLGREKVLDRLRAAL
Sequences:
>Translated_472_residues MAPFSRPHHPMIRTRFAPSPTGYLHIGGARTALFSWAFARHHGGQFVLRIEDTDIARSTPEAVQAILDGMAWLDLNHDEG PFYQTQRLYRYKEVIEQMLASGDAYHCYCSTEELDEMREAQRARGEKPRYDGRWRPEPGKTLPVPPSGVQPVVRFRNPTD GTVAWKDLVKGTIEFSNAELDDLIIARADGTPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALGATVPEYAHL SMILGDDGTKLSKRHGAVSVMQYFEEGYLPEAVINYLARLGWSHGDAELFDREQFVEWFDLDHITPSAAQFNTEKLRWLN QQYIKAADDTRLAGLARPFLIRNGATLDDGPDLAAVCALVKERAATIEALADAATLFYRVLHPTPELLAQHVTAEVRPAL ADLATRLETLEWERGAISAAFKETLAAHGLKMPKLAMPVRVLVTGEPQTPAIDATLELLGREKVLDRLRAAL >Mature_471_residues APFSRPHHPMIRTRFAPSPTGYLHIGGARTALFSWAFARHHGGQFVLRIEDTDIARSTPEAVQAILDGMAWLDLNHDEGP FYQTQRLYRYKEVIEQMLASGDAYHCYCSTEELDEMREAQRARGEKPRYDGRWRPEPGKTLPVPPSGVQPVVRFRNPTDG TVAWKDLVKGTIEFSNAELDDLIIARADGTPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALGATVPEYAHLS MILGDDGTKLSKRHGAVSVMQYFEEGYLPEAVINYLARLGWSHGDAELFDREQFVEWFDLDHITPSAAQFNTEKLRWLNQ QYIKAADDTRLAGLARPFLIRNGATLDDGPDLAAVCALVKERAATIEALADAATLFYRVLHPTPELLAQHVTAEVRPALA DLATRLETLEWERGAISAAFKETLAAHGLKMPKLAMPVRVLVTGEPQTPAIDATLELLGREKVLDRLRAAL
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=329, Percent_Identity=35.5623100303951, Blast_Score=211, Evalue=9e-55, Organism=Escherichia coli, GI1788743, Length=463, Percent_Identity=54.2116630669546, Blast_Score=508, Evalue=1e-145, Organism=Escherichia coli, GI226510925, Length=245, Percent_Identity=33.8775510204082, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI1786895, Length=125, Percent_Identity=28, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71993394, Length=477, Percent_Identity=31.2368972746331, Blast_Score=214, Evalue=9e-56, Organism=Saccharomyces cerevisiae, GI6324540, Length=337, Percent_Identity=36.7952522255193, Blast_Score=216, Evalue=5e-57, Organism=Saccharomyces cerevisiae, GI6324742, Length=287, Percent_Identity=27.5261324041812, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6321192, Length=262, Percent_Identity=27.0992366412214, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24665321, Length=498, Percent_Identity=30.9236947791165, Blast_Score=237, Evalue=1e-62,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_THIDA (Q3SI46)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315492.1 - ProteinModelPortal: Q3SI46 - SMR: Q3SI46 - STRING: Q3SI46 - GeneID: 3671318 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_1734 - NMPDR: fig|292415.3.peg.1831 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: MAHIPLI - PhylomeDB: Q3SI46 - ProtClustDB: PRK01406 - BioCyc: TDEN292415:TBD_1734-MONOMER - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 52880; Mature: 52748
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 253-253
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPFSRPHHPMIRTRFAPSPTGYLHIGGARTALFSWAFARHHGGQFVLRIEDTDIARSTP CCCCCCCCCCHHEEECCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH EAVQAILDGMAWLDLNHDEGPFYQTQRLYRYKEVIEQMLASGDAYHCYCSTEELDEMREA HHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH QRARGEKPRYDGRWRPEPGKTLPVPPSGVQPVVRFRNPTDGTVAWKDLVKGTIEFSNAEL HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHCCCCCCC DDLIIARADGTPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALGATVPEYAHL CCEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHEE SMILGDDGTKLSKRHGAVSVMQYFEEGYLPEAVINYLARLGWSHGDAELFDREQFVEWFD EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC LDHITPSAAQFNTEKLRWLNQQYIKAADDTRLAGLARPFLIRNGATLDDGPDLAAVCALV CCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHH KERAATIEALADAATLFYRVLHPTPELLAQHVTAEVRPALADLATRLETLEWERGAISAA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FKETLAAHGLKMPKLAMPVRVLVTGEPQTPAIDATLELLGREKVLDRLRAAL HHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure APFSRPHHPMIRTRFAPSPTGYLHIGGARTALFSWAFARHHGGQFVLRIEDTDIARSTP CCCCCCCCCHHEEECCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH EAVQAILDGMAWLDLNHDEGPFYQTQRLYRYKEVIEQMLASGDAYHCYCSTEELDEMREA HHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH QRARGEKPRYDGRWRPEPGKTLPVPPSGVQPVVRFRNPTDGTVAWKDLVKGTIEFSNAEL HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHCCCCCCC DDLIIARADGTPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALGATVPEYAHL CCEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHEE SMILGDDGTKLSKRHGAVSVMQYFEEGYLPEAVINYLARLGWSHGDAELFDREQFVEWFD EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC LDHITPSAAQFNTEKLRWLNQQYIKAADDTRLAGLARPFLIRNGATLDDGPDLAAVCALV CCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHH KERAATIEALADAATLFYRVLHPTPELLAQHVTAEVRPALADLATRLETLEWERGAISAA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FKETLAAHGLKMPKLAMPVRVLVTGEPQTPAIDATLELLGREKVLDRLRAAL HHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA