| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ushA [H]
Identifier: 74317639
GI number: 74317639
Start: 1705626
End: 1707359
Strand: Reverse
Name: ushA [H]
Synonym: Tbd_1621
Alternate gene names: 74317639
Gene position: 1707359-1705626 (Counterclockwise)
Preceding gene: 74317640
Following gene: 74317638
Centisome position: 58.68
GC content: 61.94
Gene sequence:
>1734_bases GTGAAATTCAGGTCTACACGGCTGGCGGTGGCGGTATGTGCGGCGCTATCGCCTTTTTCACTGGCGCACGCAGGAAGCGG CACTGGCGAGGTCACTCTCATCCACATGGGGGATCTCCATGGCCATCTGATCCCGCATCCGAATGTGCGCAGCGACGGCA ACGGCCAGAGCGAGGGCGGCGTGGCGCGCATCGCTACGTTGATCAAGGACATCCGCCGGGCCAAACCGGAGCAGACGCTG CTGGTGAATACCGGCGACACGCTGCACGGCGGCGCCGAGGCGCTGTTCACCCAGGGCGAGGCGATGATCAATGTCCTGAA CCTGTTCGGCATCGATGCCTATGCGCCGGGCAACTGGGACTTCGTCTATGGCGCGGACAAGTTCATCGAGTATTTCGTCG GTCGTCCGGCCATGGCCAACTGGAACCCGGTCATTTCGAATCTCTACTACGACAACTACCCCGGCGCCGAAGCGCGGAAC GGACAGCACGTGGCGGCGCCCTACACGATCAAGACCGTCAACGGTCTGCGCATCGGGATTCTGGGATTCACCTCCGACCG CGGACCCCAAGCGGGCGACCCCAACATCACGAAGGGTTTGAAGTTCACCAATGGTGCAGCGGAGTATGAAAAATACGTCA AGCTGCTGCGCGAGCAGGACGTCGATCTGGTCGTGGTCATTTCCGAGCTGGGCCTGCACGGCAATTTGACCCTGGCCGAC CGGATTCCGGGCGTCGACGTCATTCTGTCGTCCGACAAGCACGAGATCACGGTCAAACCCGTCGTGTCGAAACACGGCAC GCTGCTGGTCGAGCAGGGCATGGACGGCCAGGTCGTGGGCGAATTGAGCATCCGTGTGAAAGAGGGTCGGGTCATCGACA AGCAATACGTCTCTCATCGCATCACGGACCGGTTCCAGCCCGACCCCGCGATCGCCGCGGCCGTGCAGTCGGTGCGTCGG CCCTACGTGACCGGACCGCAGTTCCAAGCTGGAAAGATCAAGAATCCGTTCAACGGCTCGTTCCTTCGTTATCCGATCGA TACGGTGATCGGCCAGACCAAGGTCCCCCTGTATCGCAGCAATTTCAGCGATGAGGCGATGCCGGCCGTGACCGAAGGCA GCTCCCACGATTTCCTGACCGACGCGTTTCGCGTGATGACGGGCGCGCAGCTCGGCGGCATCACCGGTTTCCGTTATGGC ACCACGGTGGGAGCCGGACCGATCAAGCTTGAAGACCTCTATCACTTCATGCCGGTCGGACCGCAGATCGCCAAGGGTGA ACTGACCGGCGCGCAGATCAAGAAGACCCTGGAGGGCGCGCCGCAGGAAGAGGCAGGGCGTACGAACACCTGGGTCAACG GCTGGACTGCGGGCTACAGCGGGCTGACCGCGGACTTCGATCCGAAGGCGCCCCAGGGGAATCGCGTCTCAAACATCCGC GTCAACGGCCAGCCGCTGGAGCCGCAGGCCCGCTACACGGTCGCCGGCTACTATTACGATCTGGTGCCGAATCTGATCAA CCGCGTCCCGGCCAAAAACATCACCGTGCTGAAGGACGAGGATGGCAGCACACTCGATGGCACCGATGTGGTGAAGCGCT ATATCGAATCCTTGCCAGGCAAAACGGTCACCCCTGAAAACCTGCCGCTGAATCGTATCCGGCTCGTCAATCCGCTGCCG GCAGCAGAGCATGGCCTGCGCGAAATGCAACCCTTGGGGTCGGTGACGAAGTAG
Upstream 100 bases:
>100_bases ACGCTATCGATGAATCATGCCGGATCCACAATCCGGCTGTGCGGGGCAGGGTCCCGATGCCCACCCTGACGGGCATCCCA TTCAGTTCGAAAGGAATTTT
Downstream 100 bases:
>100_bases GCGTCATCCCCCGTCAGGGGCGGCCCCGGGCCGCCCTTGCGCAGGTCCTGTTTGCGCCTCCGCATCGTGCCATCCGGCTG ATTTGGAGAAGAGCGACATG
Product: 5'-nucleotidase/2' 3'-cyclic phosphodiesterase
Products: NA
Alternate protein names: UDP-sugar hydrolase; UDP-sugar diphosphatase; UDP-sugar pyrophosphatase; 5'-nucleotidase; 5'-NT [H]
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MKFRSTRLAVAVCAALSPFSLAHAGSGTGEVTLIHMGDLHGHLIPHPNVRSDGNGQSEGGVARIATLIKDIRRAKPEQTL LVNTGDTLHGGAEALFTQGEAMINVLNLFGIDAYAPGNWDFVYGADKFIEYFVGRPAMANWNPVISNLYYDNYPGAEARN GQHVAAPYTIKTVNGLRIGILGFTSDRGPQAGDPNITKGLKFTNGAAEYEKYVKLLREQDVDLVVVISELGLHGNLTLAD RIPGVDVILSSDKHEITVKPVVSKHGTLLVEQGMDGQVVGELSIRVKEGRVIDKQYVSHRITDRFQPDPAIAAAVQSVRR PYVTGPQFQAGKIKNPFNGSFLRYPIDTVIGQTKVPLYRSNFSDEAMPAVTEGSSHDFLTDAFRVMTGAQLGGITGFRYG TTVGAGPIKLEDLYHFMPVGPQIAKGELTGAQIKKTLEGAPQEEAGRTNTWVNGWTAGYSGLTADFDPKAPQGNRVSNIR VNGQPLEPQARYTVAGYYYDLVPNLINRVPAKNITVLKDEDGSTLDGTDVVKRYIESLPGKTVTPENLPLNRIRLVNPLP AAEHGLREMQPLGSVTK
Sequences:
>Translated_577_residues MKFRSTRLAVAVCAALSPFSLAHAGSGTGEVTLIHMGDLHGHLIPHPNVRSDGNGQSEGGVARIATLIKDIRRAKPEQTL LVNTGDTLHGGAEALFTQGEAMINVLNLFGIDAYAPGNWDFVYGADKFIEYFVGRPAMANWNPVISNLYYDNYPGAEARN GQHVAAPYTIKTVNGLRIGILGFTSDRGPQAGDPNITKGLKFTNGAAEYEKYVKLLREQDVDLVVVISELGLHGNLTLAD RIPGVDVILSSDKHEITVKPVVSKHGTLLVEQGMDGQVVGELSIRVKEGRVIDKQYVSHRITDRFQPDPAIAAAVQSVRR PYVTGPQFQAGKIKNPFNGSFLRYPIDTVIGQTKVPLYRSNFSDEAMPAVTEGSSHDFLTDAFRVMTGAQLGGITGFRYG TTVGAGPIKLEDLYHFMPVGPQIAKGELTGAQIKKTLEGAPQEEAGRTNTWVNGWTAGYSGLTADFDPKAPQGNRVSNIR VNGQPLEPQARYTVAGYYYDLVPNLINRVPAKNITVLKDEDGSTLDGTDVVKRYIESLPGKTVTPENLPLNRIRLVNPLP AAEHGLREMQPLGSVTK >Mature_577_residues MKFRSTRLAVAVCAALSPFSLAHAGSGTGEVTLIHMGDLHGHLIPHPNVRSDGNGQSEGGVARIATLIKDIRRAKPEQTL LVNTGDTLHGGAEALFTQGEAMINVLNLFGIDAYAPGNWDFVYGADKFIEYFVGRPAMANWNPVISNLYYDNYPGAEARN GQHVAAPYTIKTVNGLRIGILGFTSDRGPQAGDPNITKGLKFTNGAAEYEKYVKLLREQDVDLVVVISELGLHGNLTLAD RIPGVDVILSSDKHEITVKPVVSKHGTLLVEQGMDGQVVGELSIRVKEGRVIDKQYVSHRITDRFQPDPAIAAAVQSVRR PYVTGPQFQAGKIKNPFNGSFLRYPIDTVIGQTKVPLYRSNFSDEAMPAVTEGSSHDFLTDAFRVMTGAQLGGITGFRYG TTVGAGPIKLEDLYHFMPVGPQIAKGELTGAQIKKTLEGAPQEEAGRTNTWVNGWTAGYSGLTADFDPKAPQGNRVSNIR VNGQPLEPQARYTVAGYYYDLVPNLINRVPAKNITVLKDEDGSTLDGTDVVKRYIESLPGKTVTPENLPLNRIRLVNPLP AAEHGLREMQPLGSVTK
Specific function: Degradation of external UDP-glucose to uridine monophosphate and glucose-1-phosphate, which can then be used by the cell [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=236, Percent_Identity=25.8474576271186, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI1786687, Length=541, Percent_Identity=20.3327171903882, Blast_Score=73, Evalue=4e-14, Organism=Drosophila melanogaster, GI19921980, Length=505, Percent_Identity=22.5742574257426, Blast_Score=87, Evalue=4e-17, Organism=Drosophila melanogaster, GI24652512, Length=505, Percent_Identity=22.5742574257426, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI161076508, Length=509, Percent_Identity=22.7897838899804, Blast_Score=86, Evalue=6e-17, Organism=Drosophila melanogaster, GI28573524, Length=492, Percent_Identity=20.7317073170732, Blast_Score=72, Evalue=7e-13,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.6.1.45; =3.1.3.5 [H]
Molecular weight: Translated: 62532; Mature: 62532
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFRSTRLAVAVCAALSPFSLAHAGSGTGEVTLIHMGDLHGHLIPHPNVRSDGNGQSEGG CCCCHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCH VARIATLIKDIRRAKPEQTLLVNTGDTLHGGAEALFTQGEAMINVLNLFGIDAYAPGNWD HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCE FVYGADKFIEYFVGRPAMANWNPVISNLYYDNYPGAEARNGQHVAAPYTIKTVNGLRIGI EEECHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCEEEEEECCEEEEE LGFTSDRGPQAGDPNITKGLKFTNGAAEYEKYVKLLREQDVDLVVVISELGLHGNLTLAD EEECCCCCCCCCCCCHHCCCEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECC RIPGVDVILSSDKHEITVKPVVSKHGTLLVEQGMDGQVVGELSIRVKEGRVIDKQYVSHR CCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHH ITDRFQPDPAIAAAVQSVRRPYVTGPQFQAGKIKNPFNGSFLRYPIDTVIGQTKVPLYRS HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCEEEC NFSDEAMPAVTEGSSHDFLTDAFRVMTGAQLGGITGFRYGTTVGAGPIKLEDLYHFMPVG CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEHHHHHHHCCCC PQIAKGELTGAQIKKTLEGAPQEEAGRTNTWVNGWTAGYSGLTADFDPKAPQGNRVSNIR CCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE VNGQPLEPQARYTVAGYYYDLVPNLINRVPAKNITVLKDEDGSTLDGTDVVKRYIESLPG ECCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC KTVTPENLPLNRIRLVNPLPAAEHGLREMQPLGSVTK CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKFRSTRLAVAVCAALSPFSLAHAGSGTGEVTLIHMGDLHGHLIPHPNVRSDGNGQSEGG CCCCHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCH VARIATLIKDIRRAKPEQTLLVNTGDTLHGGAEALFTQGEAMINVLNLFGIDAYAPGNWD HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCE FVYGADKFIEYFVGRPAMANWNPVISNLYYDNYPGAEARNGQHVAAPYTIKTVNGLRIGI EEECHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCEEEEEECCEEEEE LGFTSDRGPQAGDPNITKGLKFTNGAAEYEKYVKLLREQDVDLVVVISELGLHGNLTLAD EEECCCCCCCCCCCCHHCCCEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECC RIPGVDVILSSDKHEITVKPVVSKHGTLLVEQGMDGQVVGELSIRVKEGRVIDKQYVSHR CCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHH ITDRFQPDPAIAAAVQSVRRPYVTGPQFQAGKIKNPFNGSFLRYPIDTVIGQTKVPLYRS HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHCCCCCCCEEEC NFSDEAMPAVTEGSSHDFLTDAFRVMTGAQLGGITGFRYGTTVGAGPIKLEDLYHFMPVG CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEHHHHHHHCCCC PQIAKGELTGAQIKKTLEGAPQEEAGRTNTWVNGWTAGYSGLTADFDPKAPQGNRVSNIR CCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEE VNGQPLEPQARYTVAGYYYDLVPNLINRVPAKNITVLKDEDGSTLDGTDVVKRYIESLPG ECCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC KTVTPENLPLNRIRLVNPLPAAEHGLREMQPLGSVTK CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA