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The map label for this gene is rci [H]

Identifier: 74317589

GI number: 74317589

Start: 1655859

End: 1657004

Strand: Direct

Name: rci [H]

Synonym: Tbd_1571

Alternate gene names: 74317589

Gene position: 1655859-1657004 (Clockwise)

Preceding gene: 74317588

Following gene: 74317590

Centisome position: 56.91

GC content: 64.92

Gene sequence:

>1146_bases
ATGCCCAACATCCGCCGCAAAAATGGCCAGTTCCAGGTTCGCCTGACGGTCAAGGGAAAGTCCATCTCCGCCACCTTCCC
GACCCGGGAAGCCGCCACGGCCTGGGCCGTCGCCACCCGCCAGGAATTGCTCCTCGGCAAACACGCTGACGTCGAACGCG
CGCGCCGCCATACCTTCGGCCAGCTGCTCGACCGCTATTCGGAAAAAATCACGCCGACGAAGCGCGGACAACGCCAGGAG
ATGCAGCGCATCCGCATGCTGCGCGCGCATCCTATCGCCGCGCGCATCGCCGGCGAGCTGACCTCGATGGACTTCGCGGA
CCTGCGCGACGAGCTGAGCCCCGGCCGCAAGCCGAACACCGTCAGGCTCTATCTGAGTCTGTGCCAGCATGTGTACCGCA
TCGCCATCTCCGAGTGGGGATTCTCGACAATGAGCAACCCGCTCGCCGGCTTGCGCAAGCCCGAGGTCGACAATGCGCGC
GATCGGCGGGTCAGCGCCGCGGAACTCGACCTCATCGTCGCCGCCATCCAGGATTTGCGCGCCCCCTGGTTCCCGTGGCT
GTTCTTCTTCGTCATCCTCTGCCCGCAGCGCCGCGGGGAGATTCTGAGCACGCGATGGTCGGACGTGGATTTTGACTTGC
GTCGCTTGCGCATCGGCCTCGGAAAAGACGGCAAGCCGCGCTACGCCCCGCTCGCGCCCGATGCCATCACCCTGCTCGAA
CATCTGCCCCGCTCCGAGGACGGCCGGCTGTTTCCGCTCTCGGCCAACGCCGTGAACATGTGCTGGAAGGGCATCCTCAA
AAAAACCGGCATCAAGGACCTGCACTGGCATGACCTGCGGCACGAGGGTACGTCGCGCTACGCGCTGATTCTCGGAAAAG
ACATTTTTAAGCTCAAGGTCGTGAGCGGCCACAAGGACATCCGCTCGCTCGACAGATACGTGAACCACAAGGCGGAGGAT
GTGGCGTTTGAGCTCGCTGGCGGCAAGCCGCCTGCCCCGCCGCGGCTGCCGCTCGACGAAGTGCTGTACGCAGGAACACG
CCCACCCGGGGGGAGCCCGAACACCGTCCCCGTCCCTGTGCCTTCCGAGCAGAAGACCGCGAAAGTCATCCCATTCAGGA
CCTCGGCGCGGGGACGACACGGATGA

Upstream 100 bases:

>100_bases
GGCCAAATCTTGGCCAAATCAGGCCAAGCCGTTTCCTTTTTGGAAGGATTGAAACGGCATTACCTATACGTCGGGTCACT
AACTTGAAAGTCGACCCGAA

Downstream 100 bases:

>100_bases
CAGCGGCGCTCACCGCTTACGCGAAAAAGACAGTCGCCGCGGCCCCCGGCATCCACATTCGATTCTGCACAGAACCCTCC
TGCCCGTTCGCGACGGGCTT

Product: site-specific integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MPNIRRKNGQFQVRLTVKGKSISATFPTREAATAWAVATRQELLLGKHADVERARRHTFGQLLDRYSEKITPTKRGQRQE
MQRIRMLRAHPIAARIAGELTSMDFADLRDELSPGRKPNTVRLYLSLCQHVYRIAISEWGFSTMSNPLAGLRKPEVDNAR
DRRVSAAELDLIVAAIQDLRAPWFPWLFFFVILCPQRRGEILSTRWSDVDFDLRRLRIGLGKDGKPRYAPLAPDAITLLE
HLPRSEDGRLFPLSANAVNMCWKGILKKTGIKDLHWHDLRHEGTSRYALILGKDIFKLKVVSGHKDIRSLDRYVNHKAED
VAFELAGGKPPAPPRLPLDEVLYAGTRPPGGSPNTVPVPVPSEQKTAKVIPFRTSARGRHG

Sequences:

>Translated_381_residues
MPNIRRKNGQFQVRLTVKGKSISATFPTREAATAWAVATRQELLLGKHADVERARRHTFGQLLDRYSEKITPTKRGQRQE
MQRIRMLRAHPIAARIAGELTSMDFADLRDELSPGRKPNTVRLYLSLCQHVYRIAISEWGFSTMSNPLAGLRKPEVDNAR
DRRVSAAELDLIVAAIQDLRAPWFPWLFFFVILCPQRRGEILSTRWSDVDFDLRRLRIGLGKDGKPRYAPLAPDAITLLE
HLPRSEDGRLFPLSANAVNMCWKGILKKTGIKDLHWHDLRHEGTSRYALILGKDIFKLKVVSGHKDIRSLDRYVNHKAED
VAFELAGGKPPAPPRLPLDEVLYAGTRPPGGSPNTVPVPVPSEQKTAKVIPFRTSARGRHG
>Mature_380_residues
PNIRRKNGQFQVRLTVKGKSISATFPTREAATAWAVATRQELLLGKHADVERARRHTFGQLLDRYSEKITPTKRGQRQEM
QRIRMLRAHPIAARIAGELTSMDFADLRDELSPGRKPNTVRLYLSLCQHVYRIAISEWGFSTMSNPLAGLRKPEVDNARD
RRVSAAELDLIVAAIQDLRAPWFPWLFFFVILCPQRRGEILSTRWSDVDFDLRRLRIGLGKDGKPRYAPLAPDAITLLEH
LPRSEDGRLFPLSANAVNMCWKGILKKTGIKDLHWHDLRHEGTSRYALILGKDIFKLKVVSGHKDIRSLDRYVNHKAEDV
AFELAGGKPPAPPRLPLDEVLYAGTRPPGGSPNTVPVPVPSEQKTAKVIPFRTSARGRHG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43068; Mature: 42937

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNIRRKNGQFQVRLTVKGKSISATFPTREAATAWAVATRQELLLGKHADVERARRHTFG
CCCCCCCCCEEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QLLDRYSEKITPTKRGQRQEMQRIRMLRAHPIAARIAGELTSMDFADLRDELSPGRKPNT
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
VRLYLSLCQHVYRIAISEWGFSTMSNPLAGLRKPEVDNARDRRVSAAELDLIVAAIQDLR
HHHHHHHHHHHHHHHHHHCCCHHHCCCHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHC
APWFPWLFFFVILCPQRRGEILSTRWSDVDFDLRRLRIGLGKDGKPRYAPLAPDAITLLE
CCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHH
HLPRSEDGRLFPLSANAVNMCWKGILKKTGIKDLHWHDLRHEGTSRYALILGKDIFKLKV
HCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCEEEEEE
VSGHKDIRSLDRYVNHKAEDVAFELAGGKPPAPPRLPLDEVLYAGTRPPGGSPNTVPVPV
ECCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCC
PSEQKTAKVIPFRTSARGRHG
CCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure 
PNIRRKNGQFQVRLTVKGKSISATFPTREAATAWAVATRQELLLGKHADVERARRHTFG
CCCCCCCCEEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QLLDRYSEKITPTKRGQRQEMQRIRMLRAHPIAARIAGELTSMDFADLRDELSPGRKPNT
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
VRLYLSLCQHVYRIAISEWGFSTMSNPLAGLRKPEVDNARDRRVSAAELDLIVAAIQDLR
HHHHHHHHHHHHHHHHHHCCCHHHCCCHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHC
APWFPWLFFFVILCPQRRGEILSTRWSDVDFDLRRLRIGLGKDGKPRYAPLAPDAITLLE
CCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHH
HLPRSEDGRLFPLSANAVNMCWKGILKKTGIKDLHWHDLRHEGTSRYALILGKDIFKLKV
HCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCEEEEEE
VSGHKDIRSLDRYVNHKAEDVAFELAGGKPPAPPRLPLDEVLYAGTRPPGGSPNTVPVPV
ECCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCC
PSEQKTAKVIPFRTSARGRHG
CCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]