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The map label for this gene is yciO [H]

Identifier: 74317545

GI number: 74317545

Start: 1614559

End: 1615182

Strand: Reverse

Name: yciO [H]

Synonym: Tbd_1527

Alternate gene names: 74317545

Gene position: 1615182-1614559 (Counterclockwise)

Preceding gene: 74317546

Following gene: 74317544

Centisome position: 55.51

GC content: 67.95

Gene sequence:

>624_bases
ATGGCGCAATACTTCAATGTTCATGCCGAGAATCCGCAGCCGCGCCTGATCCAGCAGACGGTCGACATCCTCAAGCGCGG
CGGCGTCATCGTCTATCCCACCGATTCCTGCTACGCGCTCGGCTGTCACATCGGCGACAAGGAGGCGGCGATGCGGCTGC
TGTCGGTGCGCGGGCTCGACACCGGGCACGACCTCACGCTCGTGTGTCGCGACCTGTCCGAACTCGGCCGCTACGCCCAG
GTCGACAACGCGCAGTTCCGCCTGCTCAAGGCCCACACCCCCGGCCCCTATACCTTCATCCTGCGCGGCACGCGCGAGGT
GCCGCGCCGGCTGCTGCACAAGAGGCACGACACGATCGGCCTCCGGGTGCCTGCGCATCCGCTCGTCCAGGCGTTGCTCG
AAGGGCTCGGCGAGCCGATCCTGTCATCGACGCTGCTGCTGTACGGCGAGGACGTGCCCTTGACCGAGCCCTGGGAAATC
CGCGAGCGCCTCGAGCATCAGGTCGATCTGGTCATCGACGGCGGCGCCTGCGGCCTGACGCCGACGACGGTCGTCGACCT
GACGGCCGAGACGCCGGCCGTCGTGCGCTATGGCAAGGGCGAGGCTTCGGCCTTCGAAGCCTGA

Upstream 100 bases:

>100_bases
ATCGGACGCCTGCCGCATCTGCCGCATTACTGCAAGCCGATCTGGCAGGACTGGCCCGAACTCGCCGCGCTTCTTTCCCC
TTCCCTGGCCTGAGATCCGA

Downstream 100 bases:

>100_bases
GCCCATGGAACTCACGCTCATCCAGAAAATCGCGGTGTTCGCGCTGCCGGTGATTTTTGCGATCACGCTGCACGAGGCGG
CGCACGGCTACGTCGCGCGT

Product: putative translation factor Sua5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAQYFNVHAENPQPRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLSELGRYAQ
VDNAQFRLLKAHTPGPYTFILRGTREVPRRLLHKRHDTIGLRVPAHPLVQALLEGLGEPILSSTLLLYGEDVPLTEPWEI
RERLEHQVDLVIDGGACGLTPTTVVDLTAETPAVVRYGKGEASAFEA

Sequences:

>Translated_207_residues
MAQYFNVHAENPQPRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLSELGRYAQ
VDNAQFRLLKAHTPGPYTFILRGTREVPRRLLHKRHDTIGLRVPAHPLVQALLEGLGEPILSSTLLLYGEDVPLTEPWEI
RERLEHQVDLVIDGGACGLTPTTVVDLTAETPAVVRYGKGEASAFEA
>Mature_206_residues
AQYFNVHAENPQPRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLSELGRYAQV
DNAQFRLLKAHTPGPYTFILRGTREVPRRLLHKRHDTIGLRVPAHPLVQALLEGLGEPILSSTLLLYGEDVPLTEPWEIR
ERLEHQVDLVIDGGACGLTPTTVVDLTAETPAVVRYGKGEASAFEA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=59.0243902439024, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI2367210, Length=143, Percent_Identity=31.4685314685315, Blast_Score=77, Evalue=6e-16,
Organism=Drosophila melanogaster, GI78707274, Length=180, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22855; Mature: 22723

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYFNVHAENPQPRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLD
CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHCCCC
TGHDLTLVCRDLSELGRYAQVDNAQFRLLKAHTPGPYTFILRGTREVPRRLLHKRHDTIG
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCCCCEE
LRVPAHPLVQALLEGLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGLT
EECCCHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCC
PTTVVDLTAETPAVVRYGKGEASAFEA
CCEEEEECCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
AQYFNVHAENPQPRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLD
CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHCCCC
TGHDLTLVCRDLSELGRYAQVDNAQFRLLKAHTPGPYTFILRGTREVPRRLLHKRHDTIG
CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCCCCEE
LRVPAHPLVQALLEGLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGLT
EECCCHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCC
PTTVVDLTAETPAVVRYGKGEASAFEA
CCEEEEECCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]