| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is adk
Identifier: 74317522
GI number: 74317522
Start: 1593889
End: 1594542
Strand: Reverse
Name: adk
Synonym: Tbd_1504
Alternate gene names: 74317522
Gene position: 1594542-1593889 (Counterclockwise)
Preceding gene: 74317523
Following gene: 74317521
Centisome position: 54.8
GC content: 64.37
Gene sequence:
>654_bases ATGCGTCTGATTCTGTTGGGCGGCCCTGGCGCCGGCAAAGGCACCCAGGCCAATTACATCAAGGAAAAATACGGCATTCC GCAAATCTCCACCGGCGACATGCTGCGTGCGCAGATCAAGGCGGGCACCGAACTCGGCATGAAGGCCAAGGCGATCATGG ACGCCGGCGGCCTCGTCTCCGACGACATCATCATCGGCATGGTCAAGGCGCGCCTGCAGGAGGCCGACTGCAAGAACGGT TACCTGTTCGACGGCTTCCCGCGCACGATCCCGCAAGCCGAGGCGATGAAGGCTGCCGGCGTGCCGATCGACTACGTCGT CGAGATCGACGTCGCCGACGAGGAAATCATCAAGCGCATGTCGGGCCGCCGCGTCCACGTCGCGTCCGGCCGCACCTACC ACGTCGTGTTCAACCCGCCCAAGGTCGCCGGCAAGGACGACGTGACCGGCGAGGACCTGATCCAGCGCGACGACGACCAG GAAGAGACCGTCAAGAAACGCCTCGACGTCTACCACGCACAGACCGAGCCGCTCGTGAAGTACTACGGCGACTGGGCAGC ACGCGGCGAAGCCGGCGCGCCCAAGTACGTCAAGATTTCGGGCGTCGGCAAGGTCGAGCAGATCCGCGATTCGATCTTCG CCGCCCTCGGCTGA
Upstream 100 bases:
>100_bases CTTGAATCCGGCAATAAAATTTTTTAAGTGTTGCTCCCCGCGCGCTTGCCTTAGGCTAGCGCGCTTTGGGACATTCATAT CAATTTAGGGGAGACTCGCG
Downstream 100 bases:
>100_bases GCCCGCGCGGAATCGAAGACGGGCCGCAACGACGATGCCGCACGCGATCGCCCCGATGACCGAGACCGAGCGCTGGATCG TGTCCAGCGCGGTCAAGGAG
Product: adenylate kinase
Products: NA
Alternate protein names: AK; ATP-AMP transphosphorylase
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MRLILLGGPGAGKGTQANYIKEKYGIPQISTGDMLRAQIKAGTELGMKAKAIMDAGGLVSDDIIIGMVKARLQEADCKNG YLFDGFPRTIPQAEAMKAAGVPIDYVVEIDVADEEIIKRMSGRRVHVASGRTYHVVFNPPKVAGKDDVTGEDLIQRDDDQ EETVKKRLDVYHAQTEPLVKYYGDWAARGEAGAPKYVKISGVGKVEQIRDSIFAALG
Sequences:
>Translated_217_residues MRLILLGGPGAGKGTQANYIKEKYGIPQISTGDMLRAQIKAGTELGMKAKAIMDAGGLVSDDIIIGMVKARLQEADCKNG YLFDGFPRTIPQAEAMKAAGVPIDYVVEIDVADEEIIKRMSGRRVHVASGRTYHVVFNPPKVAGKDDVTGEDLIQRDDDQ EETVKKRLDVYHAQTEPLVKYYGDWAARGEAGAPKYVKISGVGKVEQIRDSIFAALG >Mature_217_residues MRLILLGGPGAGKGTQANYIKEKYGIPQISTGDMLRAQIKAGTELGMKAKAIMDAGGLVSDDIIIGMVKARLQEADCKNG YLFDGFPRTIPQAEAMKAAGVPIDYVVEIDVADEEIIKRMSGRRVHVASGRTYHVVFNPPKVAGKDDVTGEDLIQRDDDQ EETVKKRLDVYHAQTEPLVKYYGDWAARGEAGAPKYVKISGVGKVEQIRDSIFAALG
Specific function: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth
COG id: COG0563
COG function: function code F; Adenylate kinase and related kinases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the adenylate kinase family
Homologues:
Organism=Homo sapiens, GI7524346, Length=186, Percent_Identity=50.5376344086022, Blast_Score=203, Evalue=8e-53, Organism=Homo sapiens, GI4502013, Length=186, Percent_Identity=50.5376344086022, Blast_Score=203, Evalue=9e-53, Organism=Homo sapiens, GI19923437, Length=182, Percent_Identity=45.6043956043956, Blast_Score=172, Evalue=2e-43, Organism=Homo sapiens, GI310110345, Length=182, Percent_Identity=40.1098901098901, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI53832003, Length=182, Percent_Identity=40.1098901098901, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI8051579, Length=182, Percent_Identity=40.1098901098901, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI53832001, Length=182, Percent_Identity=40.1098901098901, Blast_Score=144, Evalue=6e-35, Organism=Homo sapiens, GI4502011, Length=182, Percent_Identity=32.967032967033, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI22749187, Length=183, Percent_Identity=27.3224043715847, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI28144897, Length=182, Percent_Identity=29.1208791208791, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI28144899, Length=182, Percent_Identity=29.1208791208791, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI7706497, Length=203, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI21450759, Length=139, Percent_Identity=27.3381294964029, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI237858799, Length=139, Percent_Identity=27.3381294964029, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786680, Length=217, Percent_Identity=63.1336405529954, Blast_Score=282, Evalue=1e-77, Organism=Caenorhabditis elegans, GI17552384, Length=186, Percent_Identity=49.4623655913978, Blast_Score=201, Evalue=2e-52, Organism=Caenorhabditis elegans, GI17537943, Length=184, Percent_Identity=36.9565217391304, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17567503, Length=216, Percent_Identity=32.4074074074074, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6320432, Length=205, Percent_Identity=52.6829268292683, Blast_Score=224, Evalue=7e-60, Organism=Saccharomyces cerevisiae, GI6321018, Length=186, Percent_Identity=43.5483870967742, Blast_Score=147, Evalue=1e-36, Organism=Saccharomyces cerevisiae, GI6322828, Length=183, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=2e-16, Organism=Drosophila melanogaster, GI22026816, Length=184, Percent_Identity=52.7173913043478, Blast_Score=209, Evalue=2e-54, Organism=Drosophila melanogaster, GI17737899, Length=182, Percent_Identity=46.1538461538462, Blast_Score=158, Evalue=2e-39, Organism=Drosophila melanogaster, GI24645822, Length=182, Percent_Identity=46.1538461538462, Blast_Score=158, Evalue=2e-39, Organism=Drosophila melanogaster, GI17647141, Length=179, Percent_Identity=30.1675977653631, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI24663208, Length=179, Percent_Identity=30.1675977653631, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI221459597, Length=184, Percent_Identity=26.6304347826087, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21356893, Length=184, Percent_Identity=26.6304347826087, Blast_Score=76, Evalue=2e-14,
Paralogues:
None
Copy number: 1640 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): KAD_THIDA (Q3SIR8)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315262.1 - HSSP: P69441 - ProteinModelPortal: Q3SIR8 - SMR: Q3SIR8 - STRING: Q3SIR8 - GeneID: 3672917 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_1504 - NMPDR: fig|292415.3.peg.1504 - eggNOG: COG0563 - HOGENOM: HBG630208 - OMA: RTYHVKY - PhylomeDB: Q3SIR8 - BioCyc: TDEN292415:TBD_1504-MONOMER - GO: GO:0005737 - HAMAP: MF_00235 - InterPro: IPR006259 - InterPro: IPR000850 - InterPro: IPR007862 - PANTHER: PTHR23359 - PRINTS: PR00094 - TIGRFAMs: TIGR01351
Pfam domain/function: PF00406 ADK; PF05191 ADK_lid
EC number: =2.7.4.3
Molecular weight: Translated: 23567; Mature: 23567
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00113 ADENYLATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLILLGGPGAGKGTQANYIKEKYGIPQISTGDMLRAQIKAGTELGMKAKAIMDAGGLVS CEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCC DDIIIGMVKARLQEADCKNGYLFDGFPRTIPQAEAMKAAGVPIDYVVEIDVADEEIIKRM CHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHH SGRRVHVASGRTYHVVFNPPKVAGKDDVTGEDLIQRDDDQEETVKKRLDVYHAQTEPLVK CCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH YYGDWAARGEAGAPKYVKISGVGKVEQIRDSIFAALG HHCCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MRLILLGGPGAGKGTQANYIKEKYGIPQISTGDMLRAQIKAGTELGMKAKAIMDAGGLVS CEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCC DDIIIGMVKARLQEADCKNGYLFDGFPRTIPQAEAMKAAGVPIDYVVEIDVADEEIIKRM CHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHH SGRRVHVASGRTYHVVFNPPKVAGKDDVTGEDLIQRDDDQEETVKKRLDVYHAQTEPLVK CCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH YYGDWAARGEAGAPKYVKISGVGKVEQIRDSIFAALG HHCCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA