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The map label for this gene is rarA [H]

Identifier: 74317514

GI number: 74317514

Start: 1586860

End: 1588188

Strand: Reverse

Name: rarA [H]

Synonym: Tbd_1496

Alternate gene names: 74317514

Gene position: 1588188-1586860 (Counterclockwise)

Preceding gene: 74317515

Following gene: 74317513

Centisome position: 54.58

GC content: 69.0

Gene sequence:

>1329_bases
ATGTGCCCCCAGGACCTCTTCTCGACCGAACCCGCCGCCGCGCCTGCGCCTGACCCGCACGCGCCGCTCGCCGAGCGCCT
GCGCCCGCGCACGCTCGACGACGTCGTCGGGCAGAGTCACCTGCTCGGCCCCGGCAAGCCGCTCAGGCTCGCGTTCGACT
CGGGCAAGCTGCATTCGATGATCCTCTGGGGGCCGCCCGGCGTCGGCAAGACCACGCTCGCCCGGCTCACTGCGCAGGCC
TTCGGCGCCGATTTCATCGCGATCTCGGCCGTGCTCTCCGGCGTGAAGGACATCCGCGAGGCGGTCGAACGCGCGCGCAT
GAACCAGAAGCTCGGCCGTGCGACGATACTCTTCGTCGACGAGGTCCACCGCTTCAACAAGTCGCAGCAGGACGCCTTCC
TGCCGCACGTCGAATCGGGCCTTTTCACCTTCATCGGCGCGACCACCGAGAACCCCTCGTTCGAGGTCGTCGGCGCGCTC
TTGTCGCGCGCCCAGGTCTACGTGCTGAAATCGCTCACGCCCGACGAGCTCGGCCGCCTCATGCAGCGCGCGCTGCAGGA
ACTGCCGTCGCTCAAGCTCGCCGACGGCGTCGACAAGCTGCTGGCCGCCTACGCCGACGGCGACGCGCGCAAATTGCTCA
ACCTGCTCGAGCAACTCGACACCGCCGCGCGCACCGCGCAGGTCGAAGAAGCCGACGCGGCCTTCGTCGAGAACGCGCTC
GCGCAGTCGCTGCGCCGCTTCGACAAAGGCGGCGAAGCCTTCTACGACCAGATTTCGGCGCTGCACAAGAGCGTGCGCGG
CTCTGACCCCGACGCGTCGCTCTACTGGCTCGTGCGCATGCTCGACGGCGGCGCCGACCCGCGCTACCTCGGCCGGCGAC
TCGTGCGCATGGCGAGCGAGGACATCGGGCTGGCCGATCCGCGCGCCTTGAGACTGGCGCTCGACGCGGTCGAAACCTAC
GAACGCCTCGGCTCGCCCGAAGGCGAACTCGCGCTCGCCGAGGCCTGCCTCTATCTGGCCTGCGCACCCAAGAGCAACGC
CGCCTACGTCGCCTACAACGCCGCGCGCGCGTTCGTGGAGGCCAACCCGTCGAACGACGTGCCGATCCACCTGCGCAACG
CGCCGACCAAGCTCATGAAGGAACTCGGCTACGGGCGCGCCTATCGCTACGCTCACGACGAGCCCGAAGCCTACGCCGCC
GGCGAGCGCTACTTCCCCGACGACATCGCGGAACAGCAGTTCTACGAACCGACCCCGCGCGGGCTCGAAGGCAAGATCGC
CGAGAAGCTCGCGCATCTGCGAGAGCTCGACGACGAGGCGGAAAAGTAG

Upstream 100 bases:

>100_bases
GGGGCCGACGTTATCGGCGAGTGACAGGCGGGCGCTGCTGACGTTCACGCCATGCCCGACGCCTGAAATCGCGGCACAAT
AAGCCTCGCGCCCAACCACC

Downstream 100 bases:

>100_bases
GGGTAGACGGCGCCGCGGCCTGCCGTAAAATGCCGCGACGATACCAATAAGATCCGTCGTGACAATGCTAAAAAAAATCA
AGGCCGCCGAGCTGCGCCCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MCPQDLFSTEPAAAPAPDPHAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFDSGKLHSMILWGPPGVGKTTLARLTAQA
FGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVVGAL
LSRAQVYVLKSLTPDELGRLMQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENAL
AQSLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGGADPRYLGRRLVRMASEDIGLADPRALRLALDAVETY
ERLGSPEGELALAEACLYLACAPKSNAAYVAYNAARAFVEANPSNDVPIHLRNAPTKLMKELGYGRAYRYAHDEPEAYAA
GERYFPDDIAEQQFYEPTPRGLEGKIAEKLAHLRELDDEAEK

Sequences:

>Translated_442_residues
MCPQDLFSTEPAAAPAPDPHAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFDSGKLHSMILWGPPGVGKTTLARLTAQA
FGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVVGAL
LSRAQVYVLKSLTPDELGRLMQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENAL
AQSLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGGADPRYLGRRLVRMASEDIGLADPRALRLALDAVETY
ERLGSPEGELALAEACLYLACAPKSNAAYVAYNAARAFVEANPSNDVPIHLRNAPTKLMKELGYGRAYRYAHDEPEAYAA
GERYFPDDIAEQQFYEPTPRGLEGKIAEKLAHLRELDDEAEK
>Mature_442_residues
MCPQDLFSTEPAAAPAPDPHAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFDSGKLHSMILWGPPGVGKTTLARLTAQA
FGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVVGAL
LSRAQVYVLKSLTPDELGRLMQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENAL
AQSLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGGADPRYLGRRLVRMASEDIGLADPRALRLALDAVETY
ERLGSPEGELALAEACLYLACAPKSNAAYVAYNAARAFVEANPSNDVPIHLRNAPTKLMKELGYGRAYRYAHDEPEAYAA
GERYFPDDIAEQQFYEPTPRGLEGKIAEKLAHLRELDDEAEK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=43.6651583710407, Blast_Score=331, Evalue=8e-91,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=39.3665158371041, Blast_Score=274, Evalue=1e-73,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=56.2790697674419, Blast_Score=474, Evalue=1e-135,
Organism=Escherichia coli, GI1786676, Length=224, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=441, Percent_Identity=40.8163265306122, Blast_Score=322, Evalue=6e-89,
Organism=Saccharomyces cerevisiae, GI6324039, Length=204, Percent_Identity=26.9607843137255, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322528, Length=269, Percent_Identity=26.3940520446097, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48395; Mature: 48395

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPQDLFSTEPAAAPAPDPHAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFDSGKLHSM
CCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEEEE
ILWGPPGVGKTTLARLTAQAFGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVD
EEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHH
EVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVVGALLSRAQVYVLKSLTPDELGRL
HHHHHCCCCCHHCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
MQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENAL
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQSLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGGADPRYLGRRLVRMASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DIGLADPRALRLALDAVETYERLGSPEGELALAEACLYLACAPKSNAAYVAYNAARAFVE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCEEEEEHHHHHHEE
ANPSNDVPIHLRNAPTKLMKELGYGRAYRYAHDEPEAYAAGERYFPDDIAEQQFYEPTPR
CCCCCCCCEEECCCHHHHHHHCCCCCEECCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
GLEGKIAEKLAHLRELDDEAEK
CCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCPQDLFSTEPAAAPAPDPHAPLAERLRPRTLDDVVGQSHLLGPGKPLRLAFDSGKLHSM
CCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEEEE
ILWGPPGVGKTTLARLTAQAFGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFVD
EEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHH
EVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVVGALLSRAQVYVLKSLTPDELGRL
HHHHHCCCCCHHCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
MQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAARTAQVEEADAAFVENAL
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQSLRRFDKGGEAFYDQISALHKSVRGSDPDASLYWLVRMLDGGADPRYLGRRLVRMASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DIGLADPRALRLALDAVETYERLGSPEGELALAEACLYLACAPKSNAAYVAYNAARAFVE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCEEEEEHHHHHHEE
ANPSNDVPIHLRNAPTKLMKELGYGRAYRYAHDEPEAYAAGERYFPDDIAEQQFYEPTPR
CCCCCCCCEEECCCHHHHHHHCCCCCEECCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
GLEGKIAEKLAHLRELDDEAEK
CCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]