| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is galE [C]
Identifier: 74317489
GI number: 74317489
Start: 1555040
End: 1557532
Strand: Direct
Name: galE [C]
Synonym: Tbd_1471
Alternate gene names: 74317489
Gene position: 1555040-1557532 (Clockwise)
Preceding gene: 74317488
Following gene: 74317490
Centisome position: 53.44
GC content: 68.67
Gene sequence:
>2493_bases ATGGGCGAGGCGATCAGCAACCCCGCGGACGACGTAGCCGATTCGGCCACGACCAAGCCCCTCGTCCTGCTGACGGGCGC GACCGGCTTTCTCGGCCGCGCGCTCAGCGCCGCGCTGTCAGCCGCGGGCTATACGCTCGTCTGCCTCGACCGCACGCCCA AGCAACTCGCCCACGCCGAAAGCCTGCGCTGCGATCTGACTTCGGACGAGAGCGTCGACGCCGCGCTGCGCGAGGTGAAG CAACGTCATGGCACGCGCATCGCCGCAGTCGTCCATCTGGCCGGTTATTACGACTTCAGCGGCGAGGCCAACCCGCTCTA TCGCGCGGTCAACGTCGACGGCACGCGCCGCCTGCTGAAGGCGCTGCAGGCATTCGAGGTCGAACAATTCGTCTACGCCT CGACGATGCTCGTGCACGCGCCGACCACGCCGGGGGTGCCGATCGACGAATCGTCGCCGCTCGCGCCGCGCTGGGCCTAT CCGCAATCGAAGCTCGAGACCGAAGCCGTCGTCGCCGAGGCGCACGGCGCGATTCCCTACGTGCTGCTGCGCATCGCCGG CGTCTACACGTCGGCGGTCCAGCCGCCGACGCTGGCCCACCAGATCCGCTGGATCTACGAGCGCAAGCTCGAGGCCCGCC TCTTCCCCGGCGAGACCTCGCACGGTCAGTCGTTCATCCACATCGATGATCTTTGCGACGCGCTGGTGCGCGTGGTGCAG CGCCGGACCAGCTTGCCGCCCGACCTCGCGCTGCTGGTCGGCGAGCCCGTTCCGCTGAGCTACGACGCGACGCAAAACCG GCTCGGCACGCTGATCCACGGCGAACACTGGGAGACCGAGACCCTGCCCAAGCCTTTGGCCAAGGCCGGCGCCATGCTGC AGCGCACGCTCGAGACCGTCGTTCCCGACTCGGTCGACCGCGGCGAGAAGCCCTTCGTCAAACCCTTCATGGTCGAACTC GCCGACGACCATTACGAACTCGACGTCTCGCGCGCGCACGCGCTGCTCGGGTGGACGCCGCGCCACAGCCTGCGCGACGA GCTGCCCGGCATCGTTGCCGCGCTCAAGGCCGATCCACTCGACTGGTACCGCGCCAACAAGATCCCGCCGCCCGAGTGGC TCGAGACCCTGACCGAGCATCCCGACGACGCGCACGCCTTGCTCGAGAACGCCGAGACGACGGCGCGAGGCCAGCACGCG CAGTATCTCTGGGCGCATTTTCTCAACATCGGCCTCGGCCTGTGGCTGATGTCGAGCCCGCCGATCCTCGGCTATCCGGA TCAGGCGATGACGCTGAACGACGTCATCAGCGGCGCGCTCGTCCTCATCTTCGGCACGCTTTCGCTGTCGCGGCACTTCG CCTGGGCACGGGTCGTCACCGCGAGCGTCGGCGTATGGCTCTTGTTCGCGCCGCTCGTGTTCTGGGCGCCGACGGCCGCG GGATATCTCAACGACACGCTCGTCGGCGCGCTCGTGATCGGCTTTTCGATGCTGGTCCCGCCGACGCCGGGCGTCGGCGT CGCGGCGCGGACGACCGGGCCCGATGTGCCGCCCGGATGGGACTACACGCCCTCGGGCTGGACCCAGCGCATTCCGATCA TCGCGCTCGCCTTCGTCGGCCTCGCGATCTCGCGCTATCTCGCGGCCTACCAGCTCGGCCATACCGAAAGCGCCTGGGAC CCCTTCTTCGGCGAGGGCACCGAGCGCATCATCACCTCCGAGGTGTCGCAGGCCTGGCCGGTGCCCGACGCCGGCCTCGG CGCGACGACCTACATGCTCGAAATCCTCACCGGCATCATCGGCGGGCGCGCACGCTGGCGCACCATGCCCTGGCTCGTCG TCCTGTTCGGCGTCATGATCGTGCCGCTCGGCGCGATCAGCCTGTTCTTCATCATCATCCAGCCCATCGTCATCGGCACC TGGTGCACGCTGTGCCTCGTCGCCGCCGCGGCCATGCTGCTGCAGATTCCGTATTCGCTCGACGAACTCGTCGCCAGCGG CCAGTTTCTGCTCGACCGCCGGCGCCAGGGCAAGTCGCTGATCCTCGCTTTTTTCCGCGGCGACACGATGGAAGGCGGTG CGCGCACGCCCGGCGACGACTTCGAGCGCCCGGCGCGCGAGGTGCTCCGCGACATGCTCGGCGGCGGCGTCAACGCGCCG TGGACCCTGCTCGCGAGCGCAGCGCTCGGCATCTGGATGATGTGTACGCGGCTCGTCTTCGACACCGCGGGCGCGCAGGC CGACAGCGACCACCTGCTCGGCGCACTCGTCATCACGGCATCGATCAGCGCGCTCGCCGAAGCCGCACGCCCGCTTCGCT TCGTCAATGCACTGCTCGGCATCGCGCTGATGTTCGCCCCCTTCATGTTCGACGGCGGCAGTCTCGTCGCCGACGCGGCC GGCATCCTTGCCGGCCTGTTGCTGATCGCGCTCAGCATGCCGCGCGGTCGTATCGACAACCACTACGGGGCGTGGAGCCG CTATCTGCTCTGA
Upstream 100 bases:
>100_bases GTTTCTGCGCGATGCGGAACCGTAGCGCCGGCGCGCGGTCGCTAGCGAAGAACCGCGCGCGTCCGGGCGTGGGTGTGCAG AACCGTAGAACGGGAGGAGC
Downstream 100 bases:
>100_bases GCGGCCACGGCCATCACGGGTAAAGCGGCGCGCAGTGACAGGAGGTGCGATGGGTTCCGAGACCGACCACGACAACTTCG ACGCGGTGATCGTCGGCGCC
Product: hypothetical protein
Products: UDPglucoseal [C]
Alternate protein names: NAD-Dependent Epimerase/Dehydratase; Nucleoside-Diphosphate-Sugar Epimerase; DNA Polymerase 3 Epsilon Subunit; DTDP-Glucose 4 6-Dehydratase; UDP-Glucose Epimerase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Steroid Dehydrogenase; Nucleotide-Diphosphate-Sugar Epimerase; Facilitator Superfamily Permease
Number of amino acids: Translated: 830; Mature: 829
Protein sequence:
>830_residues MGEAISNPADDVADSATTKPLVLLTGATGFLGRALSAALSAAGYTLVCLDRTPKQLAHAESLRCDLTSDESVDAALREVK QRHGTRIAAVVHLAGYYDFSGEANPLYRAVNVDGTRRLLKALQAFEVEQFVYASTMLVHAPTTPGVPIDESSPLAPRWAY PQSKLETEAVVAEAHGAIPYVLLRIAGVYTSAVQPPTLAHQIRWIYERKLEARLFPGETSHGQSFIHIDDLCDALVRVVQ RRTSLPPDLALLVGEPVPLSYDATQNRLGTLIHGEHWETETLPKPLAKAGAMLQRTLETVVPDSVDRGEKPFVKPFMVEL ADDHYELDVSRAHALLGWTPRHSLRDELPGIVAALKADPLDWYRANKIPPPEWLETLTEHPDDAHALLENAETTARGQHA QYLWAHFLNIGLGLWLMSSPPILGYPDQAMTLNDVISGALVLIFGTLSLSRHFAWARVVTASVGVWLLFAPLVFWAPTAA GYLNDTLVGALVIGFSMLVPPTPGVGVAARTTGPDVPPGWDYTPSGWTQRIPIIALAFVGLAISRYLAAYQLGHTESAWD PFFGEGTERIITSEVSQAWPVPDAGLGATTYMLEILTGIIGGRARWRTMPWLVVLFGVMIVPLGAISLFFIIIQPIVIGT WCTLCLVAAAAMLLQIPYSLDELVASGQFLLDRRRQGKSLILAFFRGDTMEGGARTPGDDFERPAREVLRDMLGGGVNAP WTLLASAALGIWMMCTRLVFDTAGAQADSDHLLGALVITASISALAEAARPLRFVNALLGIALMFAPFMFDGGSLVADAA GILAGLLLIALSMPRGRIDNHYGAWSRYLL
Sequences:
>Translated_830_residues MGEAISNPADDVADSATTKPLVLLTGATGFLGRALSAALSAAGYTLVCLDRTPKQLAHAESLRCDLTSDESVDAALREVK QRHGTRIAAVVHLAGYYDFSGEANPLYRAVNVDGTRRLLKALQAFEVEQFVYASTMLVHAPTTPGVPIDESSPLAPRWAY PQSKLETEAVVAEAHGAIPYVLLRIAGVYTSAVQPPTLAHQIRWIYERKLEARLFPGETSHGQSFIHIDDLCDALVRVVQ RRTSLPPDLALLVGEPVPLSYDATQNRLGTLIHGEHWETETLPKPLAKAGAMLQRTLETVVPDSVDRGEKPFVKPFMVEL ADDHYELDVSRAHALLGWTPRHSLRDELPGIVAALKADPLDWYRANKIPPPEWLETLTEHPDDAHALLENAETTARGQHA QYLWAHFLNIGLGLWLMSSPPILGYPDQAMTLNDVISGALVLIFGTLSLSRHFAWARVVTASVGVWLLFAPLVFWAPTAA GYLNDTLVGALVIGFSMLVPPTPGVGVAARTTGPDVPPGWDYTPSGWTQRIPIIALAFVGLAISRYLAAYQLGHTESAWD PFFGEGTERIITSEVSQAWPVPDAGLGATTYMLEILTGIIGGRARWRTMPWLVVLFGVMIVPLGAISLFFIIIQPIVIGT WCTLCLVAAAAMLLQIPYSLDELVASGQFLLDRRRQGKSLILAFFRGDTMEGGARTPGDDFERPAREVLRDMLGGGVNAP WTLLASAALGIWMMCTRLVFDTAGAQADSDHLLGALVITASISALAEAARPLRFVNALLGIALMFAPFMFDGGSLVADAA GILAGLLLIALSMPRGRIDNHYGAWSRYLL >Mature_829_residues GEAISNPADDVADSATTKPLVLLTGATGFLGRALSAALSAAGYTLVCLDRTPKQLAHAESLRCDLTSDESVDAALREVKQ RHGTRIAAVVHLAGYYDFSGEANPLYRAVNVDGTRRLLKALQAFEVEQFVYASTMLVHAPTTPGVPIDESSPLAPRWAYP QSKLETEAVVAEAHGAIPYVLLRIAGVYTSAVQPPTLAHQIRWIYERKLEARLFPGETSHGQSFIHIDDLCDALVRVVQR RTSLPPDLALLVGEPVPLSYDATQNRLGTLIHGEHWETETLPKPLAKAGAMLQRTLETVVPDSVDRGEKPFVKPFMVELA DDHYELDVSRAHALLGWTPRHSLRDELPGIVAALKADPLDWYRANKIPPPEWLETLTEHPDDAHALLENAETTARGQHAQ YLWAHFLNIGLGLWLMSSPPILGYPDQAMTLNDVISGALVLIFGTLSLSRHFAWARVVTASVGVWLLFAPLVFWAPTAAG YLNDTLVGALVIGFSMLVPPTPGVGVAARTTGPDVPPGWDYTPSGWTQRIPIIALAFVGLAISRYLAAYQLGHTESAWDP FFGEGTERIITSEVSQAWPVPDAGLGATTYMLEILTGIIGGRARWRTMPWLVVLFGVMIVPLGAISLFFIIIQPIVIGTW CTLCLVAAAAMLLQIPYSLDELVASGQFLLDRRRQGKSLILAFFRGDTMEGGARTPGDDFERPAREVLRDMLGGGVNAPW TLLASAALGIWMMCTRLVFDTAGAQADSDHLLGALVITASISALAEAARPLRFVNALLGIALMFAPFMFDGGSLVADAAG ILAGLLLIALSMPRGRIDNHYGAWSRYLL
Specific function: Galactose metabolism; third step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 89959; Mature: 89828
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEAISNPADDVADSATTKPLVLLTGATGFLGRALSAALSAAGYTLVCLDRTPKQLAHAE CCCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH SLRCDLTSDESVDAALREVKQRHGTRIAAVVHLAGYYDFSGEANPLYRAVNVDGTRRLLK HCEECCCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHH ALQAFEVEQFVYASTMLVHAPTTPGVPIDESSPLAPRWAYPQSKLETEAVVAEAHGAIPY HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH VLLRIAGVYTSAVQPPTLAHQIRWIYERKLEARLFPGETSHGQSFIHIDDLCDALVRVVQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEHHHHHHHHHHHHH RRTSLPPDLALLVGEPVPLSYDATQNRLGTLIHGEHWETETLPKPLAKAGAMLQRTLETV HHCCCCCCEEHEECCCCCCCCCCHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VPDSVDRGEKPFVKPFMVELADDHYELDVSRAHALLGWTPRHSLRDELPGIVAALKADPL CCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DWYRANKIPPPEWLETLTEHPDDAHALLENAETTARGQHAQYLWAHFLNIGLGLWLMSSP HHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEECCC PILGYPDQAMTLNDVISGALVLIFGTLSLSRHFAWARVVTASVGVWLLFAPLVFWAPTAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH GYLNDTLVGALVIGFSMLVPPTPGVGVAARTTGPDVPPGWDYTPSGWTQRIPIIALAFVG HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LAISRYLAAYQLGHTESAWDPFFGEGTERIITSEVSQAWPVPDAGLGATTYMLEILTGII HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH GGRARWRTMPWLVVLFGVMIVPLGAISLFFIIIQPIVIGTWCTLCLVAAAAMLLQIPYSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH DELVASGQFLLDRRRQGKSLILAFFRGDTMEGGARTPGDDFERPAREVLRDMLGGGVNAP HHHHHCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH WTLLASAALGIWMMCTRLVFDTAGAQADSDHLLGALVITASISALAEAARPLRFVNALLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALMFAPFMFDGGSLVADAAGILAGLLLIALSMPRGRIDNHYGAWSRYLL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC >Mature Secondary Structure GEAISNPADDVADSATTKPLVLLTGATGFLGRALSAALSAAGYTLVCLDRTPKQLAHAE CCCCCCCHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH SLRCDLTSDESVDAALREVKQRHGTRIAAVVHLAGYYDFSGEANPLYRAVNVDGTRRLLK HCEECCCCCCHHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHH ALQAFEVEQFVYASTMLVHAPTTPGVPIDESSPLAPRWAYPQSKLETEAVVAEAHGAIPY HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH VLLRIAGVYTSAVQPPTLAHQIRWIYERKLEARLFPGETSHGQSFIHIDDLCDALVRVVQ HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEHHHHHHHHHHHHH RRTSLPPDLALLVGEPVPLSYDATQNRLGTLIHGEHWETETLPKPLAKAGAMLQRTLETV HHCCCCCCEEHEECCCCCCCCCCHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VPDSVDRGEKPFVKPFMVELADDHYELDVSRAHALLGWTPRHSLRDELPGIVAALKADPL CCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DWYRANKIPPPEWLETLTEHPDDAHALLENAETTARGQHAQYLWAHFLNIGLGLWLMSSP HHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEECCC PILGYPDQAMTLNDVISGALVLIFGTLSLSRHFAWARVVTASVGVWLLFAPLVFWAPTAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH GYLNDTLVGALVIGFSMLVPPTPGVGVAARTTGPDVPPGWDYTPSGWTQRIPIIALAFVG HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH LAISRYLAAYQLGHTESAWDPFFGEGTERIITSEVSQAWPVPDAGLGATTYMLEILTGII HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH GGRARWRTMPWLVVLFGVMIVPLGAISLFFIIIQPIVIGTWCTLCLVAAAAMLLQIPYSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH DELVASGQFLLDRRRQGKSLILAFFRGDTMEGGARTPGDDFERPAREVLRDMLGGGVNAP HHHHHCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH WTLLASAALGIWMMCTRLVFDTAGAQADSDHLLGALVITASISALAEAARPLRFVNALLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALMFAPFMFDGGSLVADAAGILAGLLLIALSMPRGRIDNHYGAWSRYLL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA