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The map label for this gene is xpsF [H]

Identifier: 74317451

GI number: 74317451

Start: 1521198

End: 1522376

Strand: Direct

Name: xpsF [H]

Synonym: Tbd_1433

Alternate gene names: 74317451

Gene position: 1521198-1522376 (Clockwise)

Preceding gene: 74317450

Following gene: 74317452

Centisome position: 52.28

GC content: 69.04

Gene sequence:

>1179_bases
ATGCGCTACCGGGTGAAAGCCTTGCGCCCGGGGGTCGGCGTGAGCGCCCTCACGCTCGAGGCGCTCGACGAGACCGAGGT
GCGCGCGCGACTACAGCGCGAAGGCCTACAGGTGATTTCCGTCGCCGCCGCGCGCGCCGCCTGGCTCAGACCGCGCGCAC
GTTTCCCGCTGTTGCTGTTCACGCAGGAGCTGATCGCACTACTCGACGCCGGGCTCACCCTGTCGGAAGCGCTGGAAACA
CTGGCCGAGAAAGAGCACCGCGCGGAGTCGCGGCAATTGATCGAGCGCCTGCTCGCCAGCATGCGCGAAGGCCGGCCGTT
TTCTGCCGCGCTTGCGGCCCAGGACGCCTTCCCGCCGCTTTACGCGGCAACGGTGCGCGCGGCCGAGAGCACGGGCGACC
TCTCGCCCGCGCTCGCCCGCTACGTCAGCTACCAGAGCCAGATCGACACGGTGAAGAAAAAGGTCGTCTCGGCGGCGATC
TATCCGATGCTGCTCATCGCGGTCGGCACGCTCGTGGTCGCGTTCCTGCTCGGCTACGTGGTGCCGCGCTTCGCCACCGT
CTACGCCGACACCGGCCGCGACCTGCCCTGGATGTCGCAGATGCTGCTGCGCTGGGGACAGGCCGTCGACAGCCACGGCG
GCCTGATCGCCCTCGCCGCCCTCGCCCTCGGCGGCGGCCTGGTGCTGGCGCTCGCCCAGCCGGCGAGCCGCGCGGCGCTA
ACCCGCCTCGCCTGGCGTGTTCCTGCGCTCGGCGAACGGCTGCGCACCTTCGACCTCGCGCGCTTCTATCGCAGCCTCGG
CATGCTGCTGAGCGGCGGCATCCCGATCGTCTCGGCGCTCGGCATGGTGTCGGGGCTGCTCTCGGCGCAACTGCGCGTCG
GCGCGACGACGGCGATGGAAGCGATGCGCCGCGGGCAAAGCATCTCGACCGCATTCGCGCTTGGCGACCTGACGACACCG
GTCGCCGCCCGTCTGTTGCGCGTCGGCGAAAAGAGCGGCCGCATGGGCGAGATGATGGAGCGCATCGCGGTCTTCCACGA
CGAAGAGATGGCGCGCTGGGTCGACTGGTTCACCCGGCTCTTCGAACCGCTTTTGATGGTGTTCATCGGGCTCGTCATCG
GGTCGATCGTGGTCCTGCTCTACATGCCTATTTTCGAACTCGCGGGGTCGCTCGAATGA

Upstream 100 bases:

>100_bases
CCGCACGCCGGGCGAACACGGCGAACTCGATCTGTACTCGTTCGGCCGTGACGGTGTCGCCGGCGGCAGCGGCGAAGGCG
CCGACATCGGCAACTGGTAG

Downstream 100 bases:

>100_bases
ACGCGCCGCAAACGCCGCTCAGCGCCGACGTGCTCGCCGGCTTGCGTCGCGAGGCGCAGGCGGCCGGCCAGAGCATCGTG
CTGCGCGTGCAGGAGCAGTT

Product: type II secretion system protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MRYRVKALRPGVGVSALTLEALDETEVRARLQREGLQVISVAAARAAWLRPRARFPLLLFTQELIALLDAGLTLSEALET
LAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPPLYAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAI
YPMLLIAVGTLVVAFLLGYVVPRFATVYADTGRDLPWMSQMLLRWGQAVDSHGGLIALAALALGGGLVLALAQPASRAAL
TRLAWRVPALGERLRTFDLARFYRSLGMLLSGGIPIVSALGMVSGLLSAQLRVGATTAMEAMRRGQSISTAFALGDLTTP
VAARLLRVGEKSGRMGEMMERIAVFHDEEMARWVDWFTRLFEPLLMVFIGLVIGSIVVLLYMPIFELAGSLE

Sequences:

>Translated_392_residues
MRYRVKALRPGVGVSALTLEALDETEVRARLQREGLQVISVAAARAAWLRPRARFPLLLFTQELIALLDAGLTLSEALET
LAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPPLYAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAI
YPMLLIAVGTLVVAFLLGYVVPRFATVYADTGRDLPWMSQMLLRWGQAVDSHGGLIALAALALGGGLVLALAQPASRAAL
TRLAWRVPALGERLRTFDLARFYRSLGMLLSGGIPIVSALGMVSGLLSAQLRVGATTAMEAMRRGQSISTAFALGDLTTP
VAARLLRVGEKSGRMGEMMERIAVFHDEEMARWVDWFTRLFEPLLMVFIGLVIGSIVVLLYMPIFELAGSLE
>Mature_392_residues
MRYRVKALRPGVGVSALTLEALDETEVRARLQREGLQVISVAAARAAWLRPRARFPLLLFTQELIALLDAGLTLSEALET
LAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPPLYAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAI
YPMLLIAVGTLVVAFLLGYVVPRFATVYADTGRDLPWMSQMLLRWGQAVDSHGGLIALAALALGGGLVLALAQPASRAAL
TRLAWRVPALGERLRTFDLARFYRSLGMLLSGGIPIVSALGMVSGLLSAQLRVGATTAMEAMRRGQSISTAFALGDLTTP
VAARLLRVGEKSGRMGEMMERIAVFHDEEMARWVDWFTRLFEPLLMVFIGLVIGSIVVLLYMPIFELAGSLE

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=394, Percent_Identity=26.9035532994924, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1786295, Length=332, Percent_Identity=29.8192771084337, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42623; Mature: 42623

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRVKALRPGVGVSALTLEALDETEVRARLQREGLQVISVAAARAAWLRPRARFPLLLF
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHH
TQELIALLDAGLTLSEALETLAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPPL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
YAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAIYPMLLIAVGTLVVAFLLGYV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPRFATVYADTGRDLPWMSQMLLRWGQAVDSHGGLIALAALALGGGLVLALAQPASRAAL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEECCCCHHHHHH
TRLAWRVPALGERLRTFDLARFYRSLGMLLSGGIPIVSALGMVSGLLSAQLRVGATTAME
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
AMRRGQSISTAFALGDLTTPVAARLLRVGEKSGRMGEMMERIAVFHDEEMARWVDWFTRL
HHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPLLMVFIGLVIGSIVVLLYMPIFELAGSLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRYRVKALRPGVGVSALTLEALDETEVRARLQREGLQVISVAAARAAWLRPRARFPLLLF
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHH
TQELIALLDAGLTLSEALETLAEKEHRAESRQLIERLLASMREGRPFSAALAAQDAFPPL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
YAATVRAAESTGDLSPALARYVSYQSQIDTVKKKVVSAAIYPMLLIAVGTLVVAFLLGYV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPRFATVYADTGRDLPWMSQMLLRWGQAVDSHGGLIALAALALGGGLVLALAQPASRAAL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHEECCCCHHHHHH
TRLAWRVPALGERLRTFDLARFYRSLGMLLSGGIPIVSALGMVSGLLSAQLRVGATTAME
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
AMRRGQSISTAFALGDLTTPVAARLLRVGEKSGRMGEMMERIAVFHDEEMARWVDWFTRL
HHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FEPLLMVFIGLVIGSIVVLLYMPIFELAGSLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]