| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is nosZ [H]
Identifier: 74317407
GI number: 74317407
Start: 1468466
End: 1470406
Strand: Direct
Name: nosZ [H]
Synonym: Tbd_1389
Alternate gene names: 74317407
Gene position: 1468466-1470406 (Clockwise)
Preceding gene: 74317404
Following gene: 74317408
Centisome position: 50.47
GC content: 61.93
Gene sequence:
>1941_bases ATGACACAGGACGACAACACGAAATCCCTCGACGCCCAGCCTGACCTGGGGCGCCGCAAATTCCTGAATACCGCAGCGCT CGTCGGTCTGTCCGGCGCGGGCCTCTCGGTCGGCCTGTCTGCCTGCAACAAGGACACCGTGCCTGCAGCGACCTCGGGCG GCGAGAAGGCCGGCGCAGCACCCGCGCACGGCAAGTACGAAGTCCCGCCCGGCCAGCTCGACGAGTACTACTCGTTCTCG AGCGGCGGCCACTCCGGCGAAGTGCGCATCTACGGTCTGCCCTCCGGCCGCGAGCTCAAGCGTATTCCGGTCTTCAACAT GGACTGTCTGGTCGGCTGGGGCGTGACCAACGAATCCAAGGCGATCCTCGGCACCAAGCCCAACGGCACGCCGAAATACA CGACGGGCGACACCCACCACGTGCACCAGTCGTATCGCGACGGCACCTACGACGGCAAGTATATGTTCGTGAACGACAAG ATTCACGGCCGCCTGGCACGCATTCGCATGGACACCATGGAATGCGACAAGATCATCGAACTGCCTAATGTCCAGGGCTT CCACGGCACCTTCACCGACAAGCGTGACCCGGTCGACGCCAGCATCAACCACACCACGCGCGTGTTCTGCGGCGGTGAAT TCGGCATCCCGCTGCCCAACGACGGTCGCGACCTCGAAGACGTCAGCAAGTACAAGTCCGTGTTCAGCTGCGTCGACGCC GAGAGCATGGAAATGCGCTGGCAGGTGCTGATCGACGGCAACTGCGATCTGGTGGCAAGCTCCTACGACGGCAAACTTGC CGCGACCAACCAGTACAACACCGAGAACGGTGCGCGCTACGAAGACATGATGTCGGCCGAAATGGACGCCTGCCTGTTCT TCAACATCGCCCGTATCGAAGAAGCCGTCAAGGCCGGCAAGGTTACCTATATCGCCGGTTCCAAGGTTCCGGTCGTCGAC GGCACGCGCGCTGCGAACGCCGACCCGAAGACCGCACTGACCTGCTACGTTCCGGTCTCGAAGAACCCGCACGGCGTGAA CATCAGCCCCGACGGCAAGTACTACGCCTGCTCGGGCAAGCTCTCGCCGACCGCGACCGTGATCGAACACGCCCTCGTGC TGAAATGGTTCGACGGCGCGTTGGCCAAGCCGCGCGATGCAGTCGTCGCCGAAGCCGAAATCGGCCTCGGCCCGCTCCAC ACGGGCTTCGACAACAAGGGCAACGCCTACACCACGCTGTTCCTCGACAGCCAGATCGTGAAGTGGAATGTCGAAGCGGC GATCAAATCGTTTAAGGGCGACAAGACTGCGAAAGTCGTTCTCGACCGGATCGACGTGCACTACCAGCCGGGGCACGGCT TCACCTCGATGGGCGAGACCAAGGAATCGGACGGCAAGTACTTCATCTCCGACAACAAGTTCTCGAAGGACCGCTTCCTG CCCGTGGGCCCGCTCCACGCCGAGACCGCGCAGATGATCGACATCAGCGGAGACAAGATGAAGCTGGTCGCGGACCACTC GGTCTATTCCGAGCCGCACGACTCGATCATCGTCCGCCGCGACATCATCAAGACGCGCCAGGTCTACGACATGGACGAGT TCCCGCTGGCCGTGAAGGACCCCAAGGATTCGGGCGTGTTCCGGAACGGCAAGAAGGTGACGGTCAAGCTGATCAGCCAG GCGCCCGCGTTCAGCCTGCGTGAATTCAAGGTCAAGAAGGGCGACGAGGTCACGATCATCCTGACCAACCACGACAAGGT GGAAGACCTCACGCACGCGCTGGCGATTCCGAAGTACGATATCAACTTCATCGTCAACCCGCAGCAGACGCAGTCGGTCA CGTTCGTCGCGGACAAGCCCGGCGTGTACTGGTGCTACTGCACCAACTTCTGCCATGCGCTGCACCTGGAAATGCGCACG CGCATGATCGTTGAGGCGTAA
Upstream 100 bases:
>100_bases AATGTCGCAGGCGCAGACAAGTGGGGGACGCTCGTGGAGATCGGCCCCACCTCTTCCCCCTAGACATTAGCTGTTTTTTT TTTACATGGAGCCGGTAAGA
Downstream 100 bases:
>100_bases AACCTGCACTACCCCCTCCTGCCGACTGGCAGGAGGGTCAGCTTCATCCTTGTACGGCCGTGTTGTCCTGCAGCAGCGTG CGGCACGCGCAAGGCAACAA
Product: nitrous-oxide reductase
Products: NA
Alternate protein names: N(2)OR; N2O reductase [H]
Number of amino acids: Translated: 646; Mature: 645
Protein sequence:
>646_residues MTQDDNTKSLDAQPDLGRRKFLNTAALVGLSGAGLSVGLSACNKDTVPAATSGGEKAGAAPAHGKYEVPPGQLDEYYSFS SGGHSGEVRIYGLPSGRELKRIPVFNMDCLVGWGVTNESKAILGTKPNGTPKYTTGDTHHVHQSYRDGTYDGKYMFVNDK IHGRLARIRMDTMECDKIIELPNVQGFHGTFTDKRDPVDASINHTTRVFCGGEFGIPLPNDGRDLEDVSKYKSVFSCVDA ESMEMRWQVLIDGNCDLVASSYDGKLAATNQYNTENGARYEDMMSAEMDACLFFNIARIEEAVKAGKVTYIAGSKVPVVD GTRAANADPKTALTCYVPVSKNPHGVNISPDGKYYACSGKLSPTATVIEHALVLKWFDGALAKPRDAVVAEAEIGLGPLH TGFDNKGNAYTTLFLDSQIVKWNVEAAIKSFKGDKTAKVVLDRIDVHYQPGHGFTSMGETKESDGKYFISDNKFSKDRFL PVGPLHAETAQMIDISGDKMKLVADHSVYSEPHDSIIVRRDIIKTRQVYDMDEFPLAVKDPKDSGVFRNGKKVTVKLISQ APAFSLREFKVKKGDEVTIILTNHDKVEDLTHALAIPKYDINFIVNPQQTQSVTFVADKPGVYWCYCTNFCHALHLEMRT RMIVEA
Sequences:
>Translated_646_residues MTQDDNTKSLDAQPDLGRRKFLNTAALVGLSGAGLSVGLSACNKDTVPAATSGGEKAGAAPAHGKYEVPPGQLDEYYSFS SGGHSGEVRIYGLPSGRELKRIPVFNMDCLVGWGVTNESKAILGTKPNGTPKYTTGDTHHVHQSYRDGTYDGKYMFVNDK IHGRLARIRMDTMECDKIIELPNVQGFHGTFTDKRDPVDASINHTTRVFCGGEFGIPLPNDGRDLEDVSKYKSVFSCVDA ESMEMRWQVLIDGNCDLVASSYDGKLAATNQYNTENGARYEDMMSAEMDACLFFNIARIEEAVKAGKVTYIAGSKVPVVD GTRAANADPKTALTCYVPVSKNPHGVNISPDGKYYACSGKLSPTATVIEHALVLKWFDGALAKPRDAVVAEAEIGLGPLH TGFDNKGNAYTTLFLDSQIVKWNVEAAIKSFKGDKTAKVVLDRIDVHYQPGHGFTSMGETKESDGKYFISDNKFSKDRFL PVGPLHAETAQMIDISGDKMKLVADHSVYSEPHDSIIVRRDIIKTRQVYDMDEFPLAVKDPKDSGVFRNGKKVTVKLISQ APAFSLREFKVKKGDEVTIILTNHDKVEDLTHALAIPKYDINFIVNPQQTQSVTFVADKPGVYWCYCTNFCHALHLEMRT RMIVEA >Mature_645_residues TQDDNTKSLDAQPDLGRRKFLNTAALVGLSGAGLSVGLSACNKDTVPAATSGGEKAGAAPAHGKYEVPPGQLDEYYSFSS GGHSGEVRIYGLPSGRELKRIPVFNMDCLVGWGVTNESKAILGTKPNGTPKYTTGDTHHVHQSYRDGTYDGKYMFVNDKI HGRLARIRMDTMECDKIIELPNVQGFHGTFTDKRDPVDASINHTTRVFCGGEFGIPLPNDGRDLEDVSKYKSVFSCVDAE SMEMRWQVLIDGNCDLVASSYDGKLAATNQYNTENGARYEDMMSAEMDACLFFNIARIEEAVKAGKVTYIAGSKVPVVDG TRAANADPKTALTCYVPVSKNPHGVNISPDGKYYACSGKLSPTATVIEHALVLKWFDGALAKPRDAVVAEAEIGLGPLHT GFDNKGNAYTTLFLDSQIVKWNVEAAIKSFKGDKTAKVVLDRIDVHYQPGHGFTSMGETKESDGKYFISDNKFSKDRFLP VGPLHAETAQMIDISGDKMKLVADHSVYSEPHDSIIVRRDIIKTRQVYDMDEFPLAVKDPKDSGVFRNGKKVTVKLISQA PAFSLREFKVKKGDEVTIILTNHDKVEDLTHALAIPKYDINFIVNPQQTQSVTFVADKPGVYWCYCTNFCHALHLEMRTR MIVEA
Specific function: Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide [H]
COG id: COG4263
COG function: function code C; Nitrous oxide reductase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008972 - InterPro: IPR002429 - InterPro: IPR011045 - InterPro: IPR006311 - InterPro: IPR015943 [H]
Pfam domain/function: PF00116 COX2 [H]
EC number: =1.7.99.6 [H]
Molecular weight: Translated: 70961; Mature: 70830
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS50857 COX2_CUA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQDDNTKSLDAQPDLGRRKFLNTAALVGLSGAGLSVGLSACNKDTVPAATSGGEKAGAA CCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCCEEEHHHCCCCCCCCCCCCCCCCCCC PAHGKYEVPPGQLDEYYSFSSGGHSGEVRIYGLPSGRELKRIPVFNMDCLVGWGVTNESK CCCCEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEECCEECCCEEEECCCCCCCC AILGTKPNGTPKYTTGDTHHVHQSYRDGTYDGKYMFVNDKIHGRLARIRMDTMECDKIIE EEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECHHCCHHHHC LPNVQGFHGTFTDKRDPVDASINHTTRVFCGGEFGIPLPNDGRDLEDVSKYKSVFSCVDA CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC ESMEMRWQVLIDGNCDLVASSYDGKLAATNQYNTENGARYEDMMSAEMDACLFFNIARIE CCCEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHCCCEEEEEEHHHHH EAVKAGKVTYIAGSKVPVVDGTRAANADPKTALTCYVPVSKNPHGVNISPDGKYYACSGK HHHHCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCEEEECCC LSPTATVIEHALVLKWFDGALAKPRDAVVAEAEIGLGPLHTGFDNKGNAYTTLFLDSQIV CCCHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEE KWNVEAAIKSFKGDKTAKVVLDRIDVHYQPGHGFTSMGETKESDGKYFISDNKFSKDRFL EEEHHHHHHHHCCCCHHEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC PVGPLHAETAQMIDISGDKMKLVADHSVYSEPHDSIIVRRDIIKTRQVYDMDEFPLAVKD CCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEC PKDSGVFRNGKKVTVKLISQAPAFSLREFKVKKGDEVTIILTNHDKVEDLTHALAIPKYD CCCCCCEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCC INFIVNPQQTQSVTFVADKPGVYWCYCTNFCHALHLEMRTRMIVEA EEEEECCCCCCEEEEEECCCCEEEEEHHCCHHHHHHHHHHEEEECC >Mature Secondary Structure TQDDNTKSLDAQPDLGRRKFLNTAALVGLSGAGLSVGLSACNKDTVPAATSGGEKAGAA CCCCCCCCCCCCCCCCHHHHHHHHHEEEECCCCCEEEHHHCCCCCCCCCCCCCCCCCCC PAHGKYEVPPGQLDEYYSFSSGGHSGEVRIYGLPSGRELKRIPVFNMDCLVGWGVTNESK CCCCEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEECCEECCCEEEECCCCCCCC AILGTKPNGTPKYTTGDTHHVHQSYRDGTYDGKYMFVNDKIHGRLARIRMDTMECDKIIE EEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECHHCCHHHHC LPNVQGFHGTFTDKRDPVDASINHTTRVFCGGEFGIPLPNDGRDLEDVSKYKSVFSCVDA CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC ESMEMRWQVLIDGNCDLVASSYDGKLAATNQYNTENGARYEDMMSAEMDACLFFNIARIE CCCEEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHCCCEEEEEEHHHHH EAVKAGKVTYIAGSKVPVVDGTRAANADPKTALTCYVPVSKNPHGVNISPDGKYYACSGK HHHHCCCEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCEEEECCC LSPTATVIEHALVLKWFDGALAKPRDAVVAEAEIGLGPLHTGFDNKGNAYTTLFLDSQIV CCCHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEE KWNVEAAIKSFKGDKTAKVVLDRIDVHYQPGHGFTSMGETKESDGKYFISDNKFSKDRFL EEEHHHHHHHHCCCCHHEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC PVGPLHAETAQMIDISGDKMKLVADHSVYSEPHDSIIVRRDIIKTRQVYDMDEFPLAVKD CCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEC PKDSGVFRNGKKVTVKLISQAPAFSLREFKVKKGDEVTIILTNHDKVEDLTHALAIPKYD CCCCCCEECCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHHCCCCCC INFIVNPQQTQSVTFVADKPGVYWCYCTNFCHALHLEMRTRMIVEA EEEEECCCCCCEEEEEECCCCEEEEEHHCCHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]