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The map label for this gene is yrkH [H]

Identifier: 74317300

GI number: 74317300

Start: 1348916

End: 1350109

Strand: Reverse

Name: yrkH [H]

Synonym: Tbd_1282

Alternate gene names: 74317300

Gene position: 1350109-1348916 (Counterclockwise)

Preceding gene: 74317322

Following gene: 74317299

Centisome position: 46.4

GC content: 68.43

Gene sequence:

>1194_bases
ATGCCGGCACCGGATACAAGCGCGAGCCCCGCGAAAGTCTGGGAAAGCCTGCTGCATGCGGCGCCGCTCTTCATCCTCGA
CGTGCGCAACGCCGACGAATTCGAGCGCTGGCGCGTCGAAGGCCCGCGCCCGGTACCGACGCTCAACGTCCCCTATTACA
CACTTCTCGATCTCGACGCCGACGACGACGTGGGCGCGGCCGTCACGCGCGGCATACACGCACAGCTCATGGACAAGGTG
CCGCGCGACCGCCCGATTCTCGCCGTCTGCGCCGAAGGCAATACGTCCGCTTACGTGGCCGAAGGCCTGCGCCGCGCCGG
CTTCGAGGCGATGAACCTCGAAGGCGGAATGGAGGCCTGGGGCGATTTCTATTACTCGCGTACGGTCGAGCGCAACGCGC
GCTTTTCCCTGTTCCAGGTCGTGCGGCCGGCGCGCGGCTGCCTGAGCCATGTTCTCGTCAGCGGGCGTCACGCGATGGTT
TTCGACCCCGCGCGGCATGTCGCGCATTACCGCGAACTGGCCGATTCGCTCGGCGCGACGATCGAGGCCGTGCTCGACAC
CCATCTCCATGCGGACCATCTGAGTGGCGGGCCTGCCCTCGGGCGACAGGCCCATGTTCGCTACCACCTGCACCCCTACG
ATGCGATCCACCCGACCGATCTTCTGCCCGCGCGCATCGACTACCGTCCGCTCGAAGCCGGCCAGACGCTGCGCTGCGGC
GAGACCGAGATCAAGGTGCTGCACTTTCCGGGGCACACCCTCGGCATGGTCGCCTTCCTCGTCGACGAGCGCTTTCTGCT
TAGCGGCGACAGCCTGTTCCTGACCTCGATCGCGCGGCCCGATCTCGGCGGCCGCGCCGACGCCTGGGCGCCGCTGCTCT
ACGCCTCGCTCGCGCGCATGGCCGCGCTGCCCGACGCGACCGTCGTGCTGCCAGCGCATTTCAGCGACATCACCGCGGGC
GACGACGACGGCGTCTACCGCGCGACGCTCGGCGAACTGAAGCGGCGCAATCCGGGCCTGCGGAAGCTGGCCGAGGGCGA
GGCGGCGTTTCTGGCGCACGTGCTCGCGAGCCTGCCCGAATTTCCCGAAGCCTACGTCGAGATCAAGCGCGCCAACGCCG
GCCTGGTCGACGTGGACGAACGGCGCGCCCGCGAACTGGAACTCGGCAAGAACATCTGCGCGCTCGGCCAGTGA

Upstream 100 bases:

>100_bases
TCGCCGTGCCGCGGCGGGGCCTATAGCGTGAAGCGCGGCCGCGCCTCGAAACGGCTCGGCCACGCAAACACCTCCGCATT
TCGCGGACAAGGAGAATCCC

Downstream 100 bases:

>100_bases
GCCGCTGCCCTCGCCTCCTCGCGGCGGCGAGCGTTTCCGGTGGCGGCTTTACTCAGGCGCGCGGCCACCTATGATCGGAG
GGGCAGCGTCGCGGCCGAGC

Product: rhodanese-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPAPDTSASPAKVWESLLHAAPLFILDVRNADEFERWRVEGPRPVPTLNVPYYTLLDLDADDDVGAAVTRGIHAQLMDKV
PRDRPILAVCAEGNTSAYVAEGLRRAGFEAMNLEGGMEAWGDFYYSRTVERNARFSLFQVVRPARGCLSHVLVSGRHAMV
FDPARHVAHYRELADSLGATIEAVLDTHLHADHLSGGPALGRQAHVRYHLHPYDAIHPTDLLPARIDYRPLEAGQTLRCG
ETEIKVLHFPGHTLGMVAFLVDERFLLSGDSLFLTSIARPDLGGRADAWAPLLYASLARMAALPDATVVLPAHFSDITAG
DDDGVYRATLGELKRRNPGLRKLAEGEAAFLAHVLASLPEFPEAYVEIKRANAGLVDVDERRARELELGKNICALGQ

Sequences:

>Translated_397_residues
MPAPDTSASPAKVWESLLHAAPLFILDVRNADEFERWRVEGPRPVPTLNVPYYTLLDLDADDDVGAAVTRGIHAQLMDKV
PRDRPILAVCAEGNTSAYVAEGLRRAGFEAMNLEGGMEAWGDFYYSRTVERNARFSLFQVVRPARGCLSHVLVSGRHAMV
FDPARHVAHYRELADSLGATIEAVLDTHLHADHLSGGPALGRQAHVRYHLHPYDAIHPTDLLPARIDYRPLEAGQTLRCG
ETEIKVLHFPGHTLGMVAFLVDERFLLSGDSLFLTSIARPDLGGRADAWAPLLYASLARMAALPDATVVLPAHFSDITAG
DDDGVYRATLGELKRRNPGLRKLAEGEAAFLAHVLASLPEFPEAYVEIKRANAGLVDVDERRARELELGKNICALGQ
>Mature_396_residues
PAPDTSASPAKVWESLLHAAPLFILDVRNADEFERWRVEGPRPVPTLNVPYYTLLDLDADDDVGAAVTRGIHAQLMDKVP
RDRPILAVCAEGNTSAYVAEGLRRAGFEAMNLEGGMEAWGDFYYSRTVERNARFSLFQVVRPARGCLSHVLVSGRHAMVF
DPARHVAHYRELADSLGATIEAVLDTHLHADHLSGGPALGRQAHVRYHLHPYDAIHPTDLLPARIDYRPLEAGQTLRCGE
TEIKVLHFPGHTLGMVAFLVDERFLLSGDSLFLTSIARPDLGGRADAWAPLLYASLARMAALPDATVVLPAHFSDITAGD
DDGVYRATLGELKRRNPGLRKLAEGEAAFLAHVLASLPEFPEAYVEIKRANAGLVDVDERRARELELGKNICALGQ

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 43537; Mature: 43406

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPDTSASPAKVWESLLHAAPLFILDVRNADEFERWRVEGPRPVPTLNVPYYTLLDLDA
CCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCC
DDDVGAAVTRGIHAQLMDKVPRDRPILAVCAEGNTSAYVAEGLRRAGFEAMNLEGGMEAW
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCHHHH
GDFYYSRTVERNARFSLFQVVRPARGCLSHVLVSGRHAMVFDPARHVAHYRELADSLGAT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH
IEAVLDTHLHADHLSGGPALGRQAHVRYHLHPYDAIHPTDLLPARIDYRPLEAGQTLRCG
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC
ETEIKVLHFPGHTLGMVAFLVDERFLLSGDSLFLTSIARPDLGGRADAWAPLLYASLARM
CCEEEEEECCCHHHHHHHHHHCCHHEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
AALPDATVVLPAHFSDITAGDDDGVYRATLGELKRRNPGLRKLAEGEAAFLAHVLASLPE
HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCCC
FPEAYVEIKRANAGLVDVDERRARELELGKNICALGQ
CCHHHHHHHHCCCCCEECHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
PAPDTSASPAKVWESLLHAAPLFILDVRNADEFERWRVEGPRPVPTLNVPYYTLLDLDA
CCCCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCC
DDDVGAAVTRGIHAQLMDKVPRDRPILAVCAEGNTSAYVAEGLRRAGFEAMNLEGGMEAW
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCHHHH
GDFYYSRTVERNARFSLFQVVRPARGCLSHVLVSGRHAMVFDPARHVAHYRELADSLGAT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH
IEAVLDTHLHADHLSGGPALGRQAHVRYHLHPYDAIHPTDLLPARIDYRPLEAGQTLRCG
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC
ETEIKVLHFPGHTLGMVAFLVDERFLLSGDSLFLTSIARPDLGGRADAWAPLLYASLARM
CCEEEEEECCCHHHHHHHHHHCCHHEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
AALPDATVVLPAHFSDITAGDDDGVYRATLGELKRRNPGLRKLAEGEAAFLAHVLASLPE
HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHCCC
FPEAYVEIKRANAGLVDVDERRARELELGKNICALGQ
CCHHHHHHHHCCCCCEECHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]