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The map label for this gene is flhC [H]

Identifier: 74317259

GI number: 74317259

Start: 1303058

End: 1303612

Strand: Direct

Name: flhC [H]

Synonym: Tbd_1241

Alternate gene names: 74317259

Gene position: 1303058-1303612 (Clockwise)

Preceding gene: 74317258

Following gene: 74317260

Centisome position: 44.78

GC content: 62.52

Gene sequence:

>555_bases
ATGAGCAAGAAAAGCCTGTTGACCGAAATGCGCGACACCCAGCTCGCGATCGAACTGATCGAACTCGGTGCCCGTCCCCA
GGTGCTCGAAGCCGAGACGTCGTTGTCGCGCGAGCGCCTGCTCAAGCTGTACAAGGAAGTCAAAGGCGTCTCGCCACCGA
AGGGCATGCTCCCGTTCTCGACCGACTGGTTCCTGACCTGGCTGCCCAACGTGCACGCGTCGCTGTTCATGAACATTCAC
GGCTACCTCGTGCGCAACAGCGAGTGCAGCGGCATCGAGGCCATGCTCAAAAGCTATCGCCTGTACCAGGAATATCTGCA
CAGCAACGAGATCGAGGCCGTGCTGAGCTTTACCCGCGCGTGGACGCTCAACCGCTTCTTCGAGAGCCGCATGCTGGCGA
CGGCGGCGTGCACGGAATGCGGCGGCCATTTCGTCGTCCACCCTGAAGACCTTCACACCCACTACGTCTGCGGGCTCTGC
AACATGCCGGCCCGCGCGGGCAAGACCCGCAAGGCCAAGGCTGACGCGCAGGCCGAATTGACCGCAGCGGCCTGA

Upstream 100 bases:

>100_bases
TTACACCAAGGATCGCGCGCTCGCTCAGTCGCACGCTGCCATTCTGATGGCCGGCCAGGCGATGGCAACGGTCTGAGTAG
CGGCATCGAGGAGCGCGGGG

Downstream 100 bases:

>100_bases
CCGCCGCGCGCAGCCTGTCCGTGCGTCTGCCGGTCACGCTCCAGTCACTCCTCATCCAGGGCCTTGCCGTCCTGCTCGCG
TTGGTTTCGTACCGTCTGCT

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSKKSLLTEMRDTQLAIELIELGARPQVLEAETSLSRERLLKLYKEVKGVSPPKGMLPFSTDWFLTWLPNVHASLFMNIH
GYLVRNSECSGIEAMLKSYRLYQEYLHSNEIEAVLSFTRAWTLNRFFESRMLATAACTECGGHFVVHPEDLHTHYVCGLC
NMPARAGKTRKAKADAQAELTAAA

Sequences:

>Translated_184_residues
MSKKSLLTEMRDTQLAIELIELGARPQVLEAETSLSRERLLKLYKEVKGVSPPKGMLPFSTDWFLTWLPNVHASLFMNIH
GYLVRNSECSGIEAMLKSYRLYQEYLHSNEIEAVLSFTRAWTLNRFFESRMLATAACTECGGHFVVHPEDLHTHYVCGLC
NMPARAGKTRKAKADAQAELTAAA
>Mature_183_residues
SKKSLLTEMRDTQLAIELIELGARPQVLEAETSLSRERLLKLYKEVKGVSPPKGMLPFSTDWFLTWLPNVHASLFMNIHG
YLVRNSECSGIEAMLKSYRLYQEYLHSNEIEAVLSFTRAWTLNRFFESRMLATAACTECGGHFVVHPEDLHTHYVCGLCN
MPARAGKTRKAKADAQAELTAAA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=171, Percent_Identity=54.3859649122807, Blast_Score=197, Evalue=3e-52,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 20766; Mature: 20635

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKSLLTEMRDTQLAIELIELGARPQVLEAETSLSRERLLKLYKEVKGVSPPKGMLPFS
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFLTWLPNVHASLFMNIHGYLVRNSECSGIEAMLKSYRLYQEYLHSNEIEAVLSFTRA
CCHHHHHCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WTLNRFFESRMLATAACTECGGHFVVHPEDLHTHYVCGLCNMPARAGKTRKAKADAQAEL
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
TAAA
CCCC
>Mature Secondary Structure 
SKKSLLTEMRDTQLAIELIELGARPQVLEAETSLSRERLLKLYKEVKGVSPPKGMLPFS
CHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFLTWLPNVHASLFMNIHGYLVRNSECSGIEAMLKSYRLYQEYLHSNEIEAVLSFTRA
CCHHHHHCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WTLNRFFESRMLATAACTECGGHFVVHPEDLHTHYVCGLCNMPARAGKTRKAKADAQAEL
HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
TAAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]