| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is treZ [H]
Identifier: 74317191
GI number: 74317191
Start: 1227318
End: 1229096
Strand: Direct
Name: treZ [H]
Synonym: Tbd_1173
Alternate gene names: 74317191
Gene position: 1227318-1229096 (Clockwise)
Preceding gene: 74317190
Following gene: 74317192
Centisome position: 42.18
GC content: 68.41
Gene sequence:
>1779_bases ATGCCGTTCGGCACCCGGATCACGCCCGAGGGCGTGCGATTTCGCCTGTGGGCGCCGGGATGCGAGCGGGTGATGCTGCA CATCGAGGAGGGGGCGGCAGTGGGGCGGATGATGATGCCGAGCGGCGACGGCTGGTTCGAGCTCCTAGTCGATGGGGCAG GTGCGGGAACGCCTTATCGCTTCGAGGTGAACGACGGCCTGCGCGTCCCCGACCCGGCCTCGCGTTTCAATCCCGACGAC GTGCACGGAGCGAGCGTCGTCGTCGACCCGACCGCCTTCGCCTGGCGTGACACGGCGTGGAAGGGGCGGCCCTGGGAAGA AGCAGTCGTGTACGAACTGCACGTCGGGACCTTCTCGCCGTCTGGCACCTTCGCCGGCGTGATCGAGCGGCTCGACTACC TCGTCGACCTCGGTGTCACGGCGATCGAGCTGATGCCGGTCGCGGACTTTCCGGGTGTGCACAACTGGGGTTACGACGGC GTCCTGCTGTTTGCGCCGGACAGCCGCTACGGCACGCCCGACGACCTCAAGGCGCTCGTCCAGTCCGCGCACGACAAGGG GCTGATGGTGTTGCTCGACGTCGTCTACAACCATTTCGGCCCCGAGGGGAATTACCTGCATGTGTACGCGCGCAAGTTCT TCAGCGAGCGCCACCACACGCTGTGGGGCGCCGCGATCAACTTCGACGGCTCCGGCAGCCGTACCGTGCGTGATTTCTTC ATCCACAACGCGCTCTACTGGCTGCAGGAATACCACTTCGACGGCCTGCGCCTCGACGCGGTGCACGCGATCATCGACGA TTCGGCGCGCCACATCCTCACCGAGCTTGCCGAGCGCGTGCACGCAGAGATCGGCAGCGAGCGTGCCGTGCATCTGATCC TCGAGAACGATGCCAACGAAGCGCACCACCTTGGACAAGGTGGCTACACGGCGCAATGGAACGACGACATCCATCACGCG CTGCACGTGCTCGCGACCGGGGAAGCCGACGGCTATTACGGCGACTACGCCGATGCGCCGCTCGTCCACCTCGGCCGCTG CCTGACCGAGGGCTTCGCCTACCAGGGCCAGGCGTCGGCCTACCACGAGGGCGAATCGCGGGGCGAGCCGAGCGGCCATC TCCCGCTGCAGGCTTTCGTCGCCTTCGTGCAAAACCACGATCAGGTGGGGAACCGCGCCTTCGGCGAGCGCCTGACGCAA CTCGCTCCGGAATCCGCGCTGCGCGCGGTCGCCGCCGTCCTGCTGCTCGCGCCGTCGGTGCCCATGCTGTTCATGGGCGA GGAGTTCGGCGCGCGGACGCCGTTCCAGTTCTTCTGCGACTTCGGCGGCGAACTGCGGGACGCGGTGACGCAGGGACGGC GGCGGGAGTTCCGCAAGTTCGCGCGCTTTGCCGACCCCGCCGCGCAAGCCGCGATACCCGACCCGAACCGGCCCGAGACG TTTCTCGCGTCGCGGCTCGACTGGTCGGAGGCGGGCGCCGGCGCGCTCGACCAATACCGCGGCCTGCTGAAGCTGAGGCG TGAAACGATCGTCCCGCGCCTGCGCCTGATCGAGCCCGGCTCGGCCGCATTCGAGGTCGTCGCGGGCGTCCTGCGCGTGC GCTGGGGCTTGCACGACGGCGCCTCCCTGCAACTCACGGCCCATCTGTCGCAAGAGCCGCTCGGCGAGGTCGCGCTCGAA GGCGAGGTCATTTTCGCCACCTCCGATGCGGCGGCGGCCGGCGTTCTCGGTCCCTGGTCGGTCGTATGGACGCTCGCGGC CGCGGAGACCCAGGCATGA
Upstream 100 bases:
>100_bases AACGCCGCGCCGTCGGCAGCGCTGCTGCAATGCGTCGGCTGGTTCAGGTGACACGCCGTTGATCGAAGGAGACATTTTGG CGAACGCTCGACACCACGAA
Downstream 100 bases:
>100_bases GCACGCTGCTCGATCAGGCCTGCGAACGCTGCGGGATACTGCCGGAGTACTACGACATATGGGGTGGGGCGCATCCGACC AGCGAGGCGGCGAAGCGCGC
Product: alpha amylase domain-containing protein
Products: NA
Alternate protein names: MTHase; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Maltooligosyl trehalose trehalohydrolase [H]
Number of amino acids: Translated: 592; Mature: 591
Protein sequence:
>592_residues MPFGTRITPEGVRFRLWAPGCERVMLHIEEGAAVGRMMMPSGDGWFELLVDGAGAGTPYRFEVNDGLRVPDPASRFNPDD VHGASVVVDPTAFAWRDTAWKGRPWEEAVVYELHVGTFSPSGTFAGVIERLDYLVDLGVTAIELMPVADFPGVHNWGYDG VLLFAPDSRYGTPDDLKALVQSAHDKGLMVLLDVVYNHFGPEGNYLHVYARKFFSERHHTLWGAAINFDGSGSRTVRDFF IHNALYWLQEYHFDGLRLDAVHAIIDDSARHILTELAERVHAEIGSERAVHLILENDANEAHHLGQGGYTAQWNDDIHHA LHVLATGEADGYYGDYADAPLVHLGRCLTEGFAYQGQASAYHEGESRGEPSGHLPLQAFVAFVQNHDQVGNRAFGERLTQ LAPESALRAVAAVLLLAPSVPMLFMGEEFGARTPFQFFCDFGGELRDAVTQGRRREFRKFARFADPAAQAAIPDPNRPET FLASRLDWSEAGAGALDQYRGLLKLRRETIVPRLRLIEPGSAAFEVVAGVLRVRWGLHDGASLQLTAHLSQEPLGEVALE GEVIFATSDAAAAGVLGPWSVVWTLAAAETQA
Sequences:
>Translated_592_residues MPFGTRITPEGVRFRLWAPGCERVMLHIEEGAAVGRMMMPSGDGWFELLVDGAGAGTPYRFEVNDGLRVPDPASRFNPDD VHGASVVVDPTAFAWRDTAWKGRPWEEAVVYELHVGTFSPSGTFAGVIERLDYLVDLGVTAIELMPVADFPGVHNWGYDG VLLFAPDSRYGTPDDLKALVQSAHDKGLMVLLDVVYNHFGPEGNYLHVYARKFFSERHHTLWGAAINFDGSGSRTVRDFF IHNALYWLQEYHFDGLRLDAVHAIIDDSARHILTELAERVHAEIGSERAVHLILENDANEAHHLGQGGYTAQWNDDIHHA LHVLATGEADGYYGDYADAPLVHLGRCLTEGFAYQGQASAYHEGESRGEPSGHLPLQAFVAFVQNHDQVGNRAFGERLTQ LAPESALRAVAAVLLLAPSVPMLFMGEEFGARTPFQFFCDFGGELRDAVTQGRRREFRKFARFADPAAQAAIPDPNRPET FLASRLDWSEAGAGALDQYRGLLKLRRETIVPRLRLIEPGSAAFEVVAGVLRVRWGLHDGASLQLTAHLSQEPLGEVALE GEVIFATSDAAAAGVLGPWSVVWTLAAAETQA >Mature_591_residues PFGTRITPEGVRFRLWAPGCERVMLHIEEGAAVGRMMMPSGDGWFELLVDGAGAGTPYRFEVNDGLRVPDPASRFNPDDV HGASVVVDPTAFAWRDTAWKGRPWEEAVVYELHVGTFSPSGTFAGVIERLDYLVDLGVTAIELMPVADFPGVHNWGYDGV LLFAPDSRYGTPDDLKALVQSAHDKGLMVLLDVVYNHFGPEGNYLHVYARKFFSERHHTLWGAAINFDGSGSRTVRDFFI HNALYWLQEYHFDGLRLDAVHAIIDDSARHILTELAERVHAEIGSERAVHLILENDANEAHHLGQGGYTAQWNDDIHHAL HVLATGEADGYYGDYADAPLVHLGRCLTEGFAYQGQASAYHEGESRGEPSGHLPLQAFVAFVQNHDQVGNRAFGERLTQL APESALRAVAAVLLLAPSVPMLFMGEEFGARTPFQFFCDFGGELRDAVTQGRRREFRKFARFADPAAQAAIPDPNRPETF LASRLDWSEAGAGALDQYRGLLKLRRETIVPRLRLIEPGSAAFEVVAGVLRVRWGLHDGASLQLTAHLSQEPLGEVALEG EVIFATSDAAAAGVLGPWSVVWTLAAAETQA
Specific function: Catalyzes The Formation Of The Alpha-1,6-Glucosidic Linkages In Glycogen By Scission Of A 1,4-Alpha-Linked Oligosaccharide From Growing Alpha-1,4-Glucan Chains And The Subsequent Attachment Of The Oligosaccharide To The Alpha-1,6 Position. Has A Preferenc
COG id: COG0296
COG function: function code G; 1,4-alpha-glucan branching enzyme
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI189458812, Length=172, Percent_Identity=34.3023255813954, Blast_Score=87, Evalue=6e-17, Organism=Escherichia coli, GI1789839, Length=277, Percent_Identity=30.6859205776173, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI2367229, Length=336, Percent_Identity=27.0833333333333, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1790687, Length=123, Percent_Identity=36.5853658536585, Blast_Score=75, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17554896, Length=172, Percent_Identity=36.6279069767442, Blast_Score=93, Evalue=3e-19, Organism=Caenorhabditis elegans, GI32564391, Length=172, Percent_Identity=36.6279069767442, Blast_Score=93, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6320826, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322245, Length=146, Percent_Identity=31.5068493150685, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI28573410, Length=172, Percent_Identity=30.8139534883721, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24586597, Length=107, Percent_Identity=37.3831775700935, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR015156 - InterPro: IPR012768 [H]
Pfam domain/function: PF09071 Alpha-amyl_C; PF00128 Alpha-amylase; PF02922 CBM_48 [H]
EC number: =3.2.1.141 [H]
Molecular weight: Translated: 65040; Mature: 64908
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFGTRITPEGVRFRLWAPGCERVMLHIEEGAAVGRMMMPSGDGWFELLVDGAGAGTPYR CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCEE FEVNDGLRVPDPASRFNPDDVHGASVVVDPTAFAWRDTAWKGRPWEEAVVYELHVGTFSP EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCEEEEEEEECCCCC SGTFAGVIERLDYLVDLGVTAIELMPVADFPGVHNWGYDGVLLFAPDSRYGTPDDLKALV CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHH QSAHDKGLMVLLDVVYNHFGPEGNYLHVYARKFFSERHHTLWGAAINFDGSGSRTVRDFF HHCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHH IHNALYWLQEYHFDGLRLDAVHAIIDDSARHILTELAERVHAEIGSERAVHLILENDANE HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH AHHLGQGGYTAQWNDDIHHALHVLATGEADGYYGDYADAPLVHLGRCLTEGFAYQGQASA HHHCCCCCEEECCCCHHHHHEEHEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC YHEGESRGEPSGHLPLQAFVAFVQNHDQVGNRAFGERLTQLAPESALRAVAAVLLLAPSV CCCCCCCCCCCCCCCHHHHHHHHHCHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC PMLFMGEEFGARTPFQFFCDFGGELRDAVTQGRRREFRKFARFADPAAQAAIPDPNRPET CEEEECCHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHH FLASRLDWSEAGAGALDQYRGLLKLRRETIVPRLRLIEPGSAAFEVVAGVLRVRWGLHDG HHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCC ASLQLTAHLSQEPLGEVALEGEVIFATSDAAAAGVLGPWSVVWTLAAAETQA CEEEEEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure PFGTRITPEGVRFRLWAPGCERVMLHIEEGAAVGRMMMPSGDGWFELLVDGAGAGTPYR CCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCEE FEVNDGLRVPDPASRFNPDDVHGASVVVDPTAFAWRDTAWKGRPWEEAVVYELHVGTFSP EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCEEEEEEEECCCCC SGTFAGVIERLDYLVDLGVTAIELMPVADFPGVHNWGYDGVLLFAPDSRYGTPDDLKALV CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHH QSAHDKGLMVLLDVVYNHFGPEGNYLHVYARKFFSERHHTLWGAAINFDGSGSRTVRDFF HHCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHH IHNALYWLQEYHFDGLRLDAVHAIIDDSARHILTELAERVHAEIGSERAVHLILENDANE HHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH AHHLGQGGYTAQWNDDIHHALHVLATGEADGYYGDYADAPLVHLGRCLTEGFAYQGQASA HHHCCCCCEEECCCCHHHHHEEHEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC YHEGESRGEPSGHLPLQAFVAFVQNHDQVGNRAFGERLTQLAPESALRAVAAVLLLAPSV CCCCCCCCCCCCCCCHHHHHHHHHCHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC PMLFMGEEFGARTPFQFFCDFGGELRDAVTQGRRREFRKFARFADPAAQAAIPDPNRPET CEEEECCHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHH FLASRLDWSEAGAGALDQYRGLLKLRRETIVPRLRLIEPGSAAFEVVAGVLRVRWGLHDG HHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCC ASLQLTAHLSQEPLGEVALEGEVIFATSDAAAAGVLGPWSVVWTLAAAETQA CEEEEEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8899719; 11427726 [H]