Click here to switch to the map view.

The map label for this gene is ybcJ [H]

Identifier: 74317175

GI number: 74317175

Start: 1211895

End: 1212119

Strand: Direct

Name: ybcJ [H]

Synonym: Tbd_1157

Alternate gene names: 74317175

Gene position: 1211895-1212119 (Clockwise)

Preceding gene: 74317174

Following gene: 74317179

Centisome position: 41.65

GC content: 66.22

Gene sequence:

>225_bases
ATGAACGATTCCATCGAATTCGTACTGCGCGGCGAGCACGTCGCGCTCTGCGACCTATTGAAACTCGCCGGCATCGCCGA
CAGTGGCGGGCAGGGGAAGATGCTGATCGTCGATGGCGAGGTGAGCGTCGACGGCCGCCCCGAGTCGCGCAAGACGGCGA
AGATCAGGGCGGGCCAGACCGTGACCTGCTTGGGGCGCACGGTCAGGGTCGTCGCGCAGGCCTAG

Upstream 100 bases:

>100_bases
GAACTGGGAGTTCTACGCGATCAATGCGTCGCTGTTCGTCGTCTTCGCCTATCCCGGATTCGTCTATCGCTATCTCTGGC
GCCGGCGTGGGGCTTAGAGG

Downstream 100 bases:

>100_bases
AGGAAGCAGAAGGTGTAGCGGCCGGAATCGAAATCGACGGCCAGGCGCGCCCCGCGATTCAAGGCGTAATCCCACGACCC
CTTGGTCGGACATCCCTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MNDSIEFVLRGEHVALCDLLKLAGIADSGGQGKMLIVDGEVSVDGRPESRKTAKIRAGQTVTCLGRTVRVVAQA

Sequences:

>Translated_74_residues
MNDSIEFVLRGEHVALCDLLKLAGIADSGGQGKMLIVDGEVSVDGRPESRKTAKIRAGQTVTCLGRTVRVVAQA
>Mature_74_residues
MNDSIEFVLRGEHVALCDLLKLAGIADSGGQGKMLIVDGEVSVDGRPESRKTAKIRAGQTVTCLGRTVRVVAQA

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7809; Mature: 7809

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSIEFVLRGEHVALCDLLKLAGIADSGGQGKMLIVDGEVSVDGRPESRKTAKIRAGQT
CCCCEEEEEECCEEHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCEEEEECCCE
VTCLGRTVRVVAQA
EEECCCEEEEEECC
>Mature Secondary Structure
MNDSIEFVLRGEHVALCDLLKLAGIADSGGQGKMLIVDGEVSVDGRPESRKTAKIRAGQT
CCCCEEEEEECCEEHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCCCCEEEEECCCE
VTCLGRTVRVVAQA
EEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]