Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is gpmB [H]

Identifier: 74317139

GI number: 74317139

Start: 1176977

End: 1177573

Strand: Direct

Name: gpmB [H]

Synonym: Tbd_1121

Alternate gene names: 74317139

Gene position: 1176977-1177573 (Clockwise)

Preceding gene: 74317138

Following gene: 74317140

Centisome position: 40.45

GC content: 71.19

Gene sequence:

>597_bases
GTGACGACCGTGCTGGACTTCCTGCGGCACGGCGAACCCGTCGGCGGCCGCAAGTACCGCGGGCAGGTCGACGACGCGCT
GTCCGAGTTGGGCTGGGCCCAGATGCACGCCGCGGTCGGCGAAGCCGCGCCGTGGACCCGGATCGTCGCCTCACCGCTGC
TGCGCTGCCGCGCGTTCGCCGAGGTGCTCGCCGCGCAGCGCGGCCTGCCTCTGTTTTTCGACCCGCGCCTGAAGGAAGTC
GGCTTCGGCGAGTGGGAAGGCAAGTCTGCCGCGGAGATCGAGCAGGCGGCGCCCGGTACGCTCGCGCGCTTCAAGGCCGA
TCCGATCAACGCGCGGCCGGCCGGGGCGGAAGCGCTCCCCGACTTCCTCGCGCGCGTCTCGGCGGCGCTCGACGAACTCG
TCGCGCGCCATGCCGGCGAGCATGTGCTCGTGGTCGGCCATGCGGGCGTGATGCGCATGGCGCTCGCGTGGGCCCTGGAT
ATTCCGTTGCAACAGGCCTACCGGATCGAAGTGGCGAATGCCTCGTTCACGCGTCTGCGTTGCGAGGGCGGCCGATCGAC
ACTGGTTTTTCACGGCAGCGCGCGCGTCGAGGCGTGA

Upstream 100 bases:

>100_bases
CGCGCCGTATCGCGGGCAAGCCCAGTACCGCGATCGAAGCCGAGCTCGGCTACATGGACGAGCCCGAACTGATCCACCGC
GACAACCTGGTCGTTCTGGC

Downstream 100 bases:

>100_bases
CCCGGCGGGGCATCCTCGCGCTGTGCCTGCTGCTCGCCGGGGTGACGCACGCCGCCCCGGTCCGCGTCGTCGACGACGCC
GGGCTCACGCTGGAGCTTGC

Product: alpha-ribazole-5`-phosphate phosphatase CobC

Products: NA

Alternate protein names: PGAM; Phosphoglyceromutase [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTTVLDFLRHGEPVGGRKYRGQVDDALSELGWAQMHAAVGEAAPWTRIVASPLLRCRAFAEVLAAQRGLPLFFDPRLKEV
GFGEWEGKSAAEIEQAAPGTLARFKADPINARPAGAEALPDFLARVSAALDELVARHAGEHVLVVGHAGVMRMALAWALD
IPLQQAYRIEVANASFTRLRCEGGRSTLVFHGSARVEA

Sequences:

>Translated_198_residues
MTTVLDFLRHGEPVGGRKYRGQVDDALSELGWAQMHAAVGEAAPWTRIVASPLLRCRAFAEVLAAQRGLPLFFDPRLKEV
GFGEWEGKSAAEIEQAAPGTLARFKADPINARPAGAEALPDFLARVSAALDELVARHAGEHVLVVGHAGVMRMALAWALD
IPLQQAYRIEVANASFTRLRCEGGRSTLVFHGSARVEA
>Mature_197_residues
TTVLDFLRHGEPVGGRKYRGQVDDALSELGWAQMHAAVGEAAPWTRIVASPLLRCRAFAEVLAAQRGLPLFFDPRLKEVG
FGEWEGKSAAEIEQAAPGTLARFKADPINARPAGAEALPDFLARVSAALDELVARHAGEHVLVVGHAGVMRMALAWALDI
PLQQAYRIEVANASFTRLRCEGGRSTLVFHGSARVEA

Specific function: Unknown

COG id: COG0406

COG function: function code G; Fructose-2,6-bisphosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphoglycerate mutase family. GpmB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790856, Length=177, Percent_Identity=25.9887005649718, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR001345
- InterPro:   IPR023086 [H]

Pfam domain/function: PF00300 PGAM [H]

EC number: =5.4.2.1 [H]

Molecular weight: Translated: 21377; Mature: 21246

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVLDFLRHGEPVGGRKYRGQVDDALSELGWAQMHAAVGEAAPWTRIVASPLLRCRAFA
CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EVLAAQRGLPLFFDPRLKEVGFGEWEGKSAAEIEQAAPGTLARFKADPINARPAGAEALP
HHHHHHCCCCEEECCCHHHCCCCCCCCCCHHHHHHCCCCCHHHEECCCCCCCCCCHHHHH
DFLARVSAALDELVARHAGEHVLVVGHAGVMRMALAWALDIPLQQAYRIEVANASFTRLR
HHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHEEEEECCCCEEEEE
CEGGRSTLVFHGSARVEA
ECCCCEEEEEECCCCCCC
>Mature Secondary Structure 
TTVLDFLRHGEPVGGRKYRGQVDDALSELGWAQMHAAVGEAAPWTRIVASPLLRCRAFA
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
EVLAAQRGLPLFFDPRLKEVGFGEWEGKSAAEIEQAAPGTLARFKADPINARPAGAEALP
HHHHHHCCCCEEECCCHHHCCCCCCCCCCHHHHHHCCCCCHHHEECCCCCCCCCCHHHHH
DFLARVSAALDELVARHAGEHVLVVGHAGVMRMALAWALDIPLQQAYRIEVANASFTRLR
HHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCHHHHEEEEECCCCEEEEE
CEGGRSTLVFHGSARVEA
ECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA