| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yiiP [C]
Identifier: 74317132
GI number: 74317132
Start: 1171040
End: 1171957
Strand: Reverse
Name: yiiP [C]
Synonym: Tbd_1114
Alternate gene names: 74317132
Gene position: 1171957-1171040 (Counterclockwise)
Preceding gene: 74317134
Following gene: 74317129
Centisome position: 40.28
GC content: 67.32
Gene sequence:
>918_bases ATGCACGCCTCCCTCAAACGCTATGCCTGGCTTTCGATCGCCGCCGCGGTGGCCACGATCCTCCTCAAGGGCTCGGCATG GTGGCTCACGGGATCGGTCGGCCTGCTCTCGGACGCCCTCGAATCCTTCGTCAACCTCGCCGGCGCGATGATGGCGCTGG CGATGCTTTCGCTCGCGGCGCAGCCGGCCGACGACAACCACGCGCATGGCCACGGCAAGGCCGAATATTTCTCGAGCGCG TTCGAAGGTTTCCTGATTCTCGTCGCCGCCATGAGCATCGGCTACGCCGCGGTCGAGCGCCTGCTGAATCCGCAGCCGCT CGAGACGGTCGGAATCGGACTCGCGATCTCGGTCATCGCGTCGATCATCAATCTCGTCACCTCGCGCGTCCTCTTGGGCG TCGGCCGCAAATACAAGTCGATCACGCTCGAGGCGGACGCGCACCACCTGCTGACCGACGTCTGGACGTCGGCGGGGGTA ATCGCCGGCGTCGCGCTCGTCTGGTTCACTGGCTGGCTGTGGCTGGACCCGGTCATCGCGCTGCTCGTCGCCTTGAACAT CGTCTGGACCGGATGGCAGTTGCTGCAGCGCTCGGCCTCCGGACTCATGGACGTCTCGCTACCCGAGGCCGACCTGCGCG CCATCGAAACCATCCTCGATGGCTACCGCCGCCACGGCCTGGACTTTCACGCGCTGCGCACGCGCCAGGCCGGTGCCCGC GCCTTCGTCAGTGTGCATCTGCTGGTGCCGGGAGCGTGGACCGTCCAGCAGGGCCACGACTGGTCGGAGCGCGTGGAGTC CGACATCCGGCGCGCGGTCAGCCAGGTCCACATCACGACCCATCTCGAGCCCCTCGAGGATCCGCTGTCGCTGGCCGACT CCGGCCTCGACCGCCACGACGAGGGAAGGCGGGAATGA
Upstream 100 bases:
>100_bases CAAGGTCGTGACGCGCTAGCGTAGCGCAAGTCGCCCGTAGCCGCGCGGGACGGCCGCGGCCGCGCGATACAATGCCCCTC CCGCTCCGCAGACCCCGCAC
Downstream 100 bases:
>100_bases ACGCGACGGCGCACGCCCAGGGACAGCCCCCGCCCTAGCCTCGCGTTTTTCGCCGCCACGCCGACCATGCCAGGAGATAG GCGGCGAGGTTGACGACGAC
Product: cation efflux protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MHASLKRYAWLSIAAAVATILLKGSAWWLTGSVGLLSDALESFVNLAGAMMALAMLSLAAQPADDNHAHGHGKAEYFSSA FEGFLILVAAMSIGYAAVERLLNPQPLETVGIGLAISVIASIINLVTSRVLLGVGRKYKSITLEADAHHLLTDVWTSAGV IAGVALVWFTGWLWLDPVIALLVALNIVWTGWQLLQRSASGLMDVSLPEADLRAIETILDGYRRHGLDFHALRTRQAGAR AFVSVHLLVPGAWTVQQGHDWSERVESDIRRAVSQVHITTHLEPLEDPLSLADSGLDRHDEGRRE
Sequences:
>Translated_305_residues MHASLKRYAWLSIAAAVATILLKGSAWWLTGSVGLLSDALESFVNLAGAMMALAMLSLAAQPADDNHAHGHGKAEYFSSA FEGFLILVAAMSIGYAAVERLLNPQPLETVGIGLAISVIASIINLVTSRVLLGVGRKYKSITLEADAHHLLTDVWTSAGV IAGVALVWFTGWLWLDPVIALLVALNIVWTGWQLLQRSASGLMDVSLPEADLRAIETILDGYRRHGLDFHALRTRQAGAR AFVSVHLLVPGAWTVQQGHDWSERVESDIRRAVSQVHITTHLEPLEDPLSLADSGLDRHDEGRRE >Mature_305_residues MHASLKRYAWLSIAAAVATILLKGSAWWLTGSVGLLSDALESFVNLAGAMMALAMLSLAAQPADDNHAHGHGKAEYFSSA FEGFLILVAAMSIGYAAVERLLNPQPLETVGIGLAISVIASIINLVTSRVLLGVGRKYKSITLEADAHHLLTDVWTSAGV IAGVALVWFTGWLWLDPVIALLVALNIVWTGWQLLQRSASGLMDVSLPEADLRAIETILDGYRRHGLDFHALRTRQAGAR AFVSVHLLVPGAWTVQQGHDWSERVESDIRRAVSQVHITTHLEPLEDPLSLADSGLDRHDEGRRE
Specific function: Unknown
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=286, Percent_Identity=28.3216783216783, Blast_Score=133, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 33083; Mature: 33083
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHASLKRYAWLSIAAAVATILLKGSAWWLTGSVGLLSDALESFVNLAGAMMALAMLSLAA CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPADDNHAHGHGKAEYFSSAFEGFLILVAAMSIGYAAVERLLNPQPLETVGIGLAISVIA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SIINLVTSRVLLGVGRKYKSITLEADAHHLLTDVWTSAGVIAGVALVWFTGWLWLDPVIA HHHHHHHHHHHHHCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVALNIVWTGWQLLQRSASGLMDVSLPEADLRAIETILDGYRRHGLDFHALRTRQAGAR HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHH AFVSVHLLVPGAWTVQQGHDWSERVESDIRRAVSQVHITTHLEPLEDPLSLADSGLDRHD HHEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC EGRRE CCCCC >Mature Secondary Structure MHASLKRYAWLSIAAAVATILLKGSAWWLTGSVGLLSDALESFVNLAGAMMALAMLSLAA CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPADDNHAHGHGKAEYFSSAFEGFLILVAAMSIGYAAVERLLNPQPLETVGIGLAISVIA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SIINLVTSRVLLGVGRKYKSITLEADAHHLLTDVWTSAGVIAGVALVWFTGWLWLDPVIA HHHHHHHHHHHHHCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVALNIVWTGWQLLQRSASGLMDVSLPEADLRAIETILDGYRRHGLDFHALRTRQAGAR HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHH AFVSVHLLVPGAWTVQQGHDWSERVESDIRRAVSQVHITTHLEPLEDPLSLADSGLDRHD HHEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC EGRRE CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]