| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317128
Identifier: 74317128
GI number: 74317128
Start: 1168116
End: 1169054
Strand: Reverse
Name: 74317128
Synonym: Tbd_1110
Alternate gene names: NA
Gene position: 1169054-1168116 (Counterclockwise)
Preceding gene: 74317129
Following gene: 74317123
Centisome position: 40.18
GC content: 70.93
Gene sequence:
>939_bases GTGGCGTCCTGCGCGCATCGCGGGGCCGTGCTCGAACACGCTGGCGACTTGCCACAACGTGTCGAACTGAGCGAGACCCC GTTCTTCCCGCAGGAGCGCTATCAATGCGGGCCTGCCGCGCTCGCGACAGTGCTCGGTGCCGAAGGCAGCGCGGTGGCAC CCGAGGCGCTCGTCTCCGAGGTCTACCTGCCGTCGCGCAAGGGCAGTCTGCAGACGGAAATCGTTGCCGCGGCGCGCAAA CGCGGAAAGCTGGCGGTGCCCGTGTCGTCGACGCTCGACGGCTTGCTGGCCGAAGTCGCGGCCGGGCATCCGGTGCTGGT CCTGCAGAACCTGGGACTCGACTGGCTGCCGCGCTGGCATTACGCCGTCGTGATTGGCTACGACCTCGAGCAGAGCACGA TGATCCTGCGTTCGGGAACGGAGGCGAGACGCCTCACGCCCTTCGACGTTTTTCTCAAGACCTGGGACCGTTCAGGCCGC TGGGGCCTGGTCGTTCTCGAACCGGGCGCCCTCCCCGCGCGCGCCGAGCCGGCAAGCTATCTGGCGGCGGCGAGCACGCT CGAAACCCTCGGCCAACGCGACGCAGCCGCGACTGCCTATCGGGCCGCCACCCGTCGCTGGCCCGACCATGCCGCCGCCT GGCTCGCGCTCGGAAACAGCCATTACGCGCGGCGGGCACTGCCGGAAGCCGAAGCCGCGTTTCGCGCGGCGGTCGGCGCC CAGGCCGATGCCGCGCCCGCCTGGAACAACCTCGCCTATGCGCTCGCCGGGCGCGGCTGCATCGAGGCGGCGCGCAAGGC GGCGCGTTGCGCGGCGCGCATCGCACCGGCCGAGCGCACGTTCGCGGAAACCCTGGAGGACATGGAAAAACGCATGGGAA AACGCCCTGTGGCGGCCGGCCCGGTCTGCCAGGCGCCGCCGCCTTGTCCGGCCTCCTAG
Upstream 100 bases:
>100_bases ACCGACATCTTCCCCTTCGTCGACCCGATCCGGTAAACGGCGGCCGATGCCGGGTCGTCGCAGCGCAGCACTTCTGCTCG CCGCCTGGCTGGGGTTGGGC
Downstream 100 bases:
>100_bases GCGCTGCAGCGAAGCAGCGCCGGAAACGGAGGGCCGCACAGGCACCCAAGCTGTATCGGGCTCGCTCGACAGTATCGGCG CGGGTCGCTGGGCGTTGGTT
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: TPR Repeat-Containing Protein; Lipoprotein; Tetratricopeptide TPR_2 Repeat Protein; FOG TPR Repeat
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MASCAHRGAVLEHAGDLPQRVELSETPFFPQERYQCGPAALATVLGAEGSAVAPEALVSEVYLPSRKGSLQTEIVAAARK RGKLAVPVSSTLDGLLAEVAAGHPVLVLQNLGLDWLPRWHYAVVIGYDLEQSTMILRSGTEARRLTPFDVFLKTWDRSGR WGLVVLEPGALPARAEPASYLAAASTLETLGQRDAAATAYRAATRRWPDHAAAWLALGNSHYARRALPEAEAAFRAAVGA QADAAPAWNNLAYALAGRGCIEAARKAARCAARIAPAERTFAETLEDMEKRMGKRPVAAGPVCQAPPPCPAS
Sequences:
>Translated_312_residues MASCAHRGAVLEHAGDLPQRVELSETPFFPQERYQCGPAALATVLGAEGSAVAPEALVSEVYLPSRKGSLQTEIVAAARK RGKLAVPVSSTLDGLLAEVAAGHPVLVLQNLGLDWLPRWHYAVVIGYDLEQSTMILRSGTEARRLTPFDVFLKTWDRSGR WGLVVLEPGALPARAEPASYLAAASTLETLGQRDAAATAYRAATRRWPDHAAAWLALGNSHYARRALPEAEAAFRAAVGA QADAAPAWNNLAYALAGRGCIEAARKAARCAARIAPAERTFAETLEDMEKRMGKRPVAAGPVCQAPPPCPAS >Mature_311_residues ASCAHRGAVLEHAGDLPQRVELSETPFFPQERYQCGPAALATVLGAEGSAVAPEALVSEVYLPSRKGSLQTEIVAAARKR GKLAVPVSSTLDGLLAEVAAGHPVLVLQNLGLDWLPRWHYAVVIGYDLEQSTMILRSGTEARRLTPFDVFLKTWDRSGRW GLVVLEPGALPARAEPASYLAAASTLETLGQRDAAATAYRAATRRWPDHAAAWLALGNSHYARRALPEAEAAFRAAVGAQ ADAAPAWNNLAYALAGRGCIEAARKAARCAARIAPAERTFAETLEDMEKRMGKRPVAAGPVCQAPPPCPAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33176; Mature: 33045
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASCAHRGAVLEHAGDLPQRVELSETPFFPQERYQCGPAALATVLGAEGSAVAPEALVSE CCCCHHHCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCHHHHHHH VYLPSRKGSLQTEIVAAARKRGKLAVPVSSTLDGLLAEVAAGHPVLVLQNLGLDWLPRWH HHCCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE YAVVIGYDLEQSTMILRSGTEARRLTPFDVFLKTWDRSGRWGLVVLEPGALPARAEPASY EEEEEEECCCCCEEEECCCCCHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHH LAAASTLETLGQRDAAATAYRAATRRWPDHAAAWLALGNSHYARRALPEAEAAFRAAVGA HHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCC QADAAPAWNNLAYALAGRGCIEAARKAARCAARIAPAERTFAETLEDMEKRMGKRPVAAG CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC PVCQAPPPCPAS CCCCCCCCCCCC >Mature Secondary Structure ASCAHRGAVLEHAGDLPQRVELSETPFFPQERYQCGPAALATVLGAEGSAVAPEALVSE CCCHHHCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCCCHHHHHHH VYLPSRKGSLQTEIVAAARKRGKLAVPVSSTLDGLLAEVAAGHPVLVLQNLGLDWLPRWH HHCCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE YAVVIGYDLEQSTMILRSGTEARRLTPFDVFLKTWDRSGRWGLVVLEPGALPARAEPASY EEEEEEECCCCCEEEECCCCCHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHH LAAASTLETLGQRDAAATAYRAATRRWPDHAAAWLALGNSHYARRALPEAEAAFRAAVGA HHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCC QADAAPAWNNLAYALAGRGCIEAARKAARCAARIAPAERTFAETLEDMEKRMGKRPVAAG CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC PVCQAPPPCPAS CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA