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The map label for this gene is ydiU [C]

Identifier: 74317037

GI number: 74317037

Start: 1086440

End: 1087906

Strand: Reverse

Name: ydiU [C]

Synonym: Tbd_1019

Alternate gene names: 74317037

Gene position: 1087906-1086440 (Counterclockwise)

Preceding gene: 74317038

Following gene: 74317036

Centisome position: 37.39

GC content: 67.08

Gene sequence:

>1467_bases
ATGGCCACGCTTGAATCGCTCACCTTCGACAACGGCTTCGCCCGTCTGCCCGAGACCTATTACGCGCGCGTCTGCCCGAC
ACCGGTGCCCGATCCCTATCTCGTCTGCTACAGCCCCGAGGCACTGTCGCTGCTCGATCTCGACGCAACTGAACTGAAGC
GGCCCGAAACGATCGAGACGCTCGCCGGCAATCGCCTGCTGCCCGGCATGGACGCCATCGCCGCACTCTACGCCGGCCAC
CAGTTCGGCCATTACGTGCCGCAGCTCGGCGACGGCCGCGCGATCCTCCTGGGCGAAGTCAGGAACCGCGCCGGCGAGGG
TTGGGAGATCCAGCTCAAGGGCGCCGGGCGCACCCCCTATTCGCGCGGCGGCGACGGGCGTGCGGTGCTGCGCTCGAGCA
TCCGCGAATTTCTCTGCTCCGAGGCGATGCACGCGCTCGACATTCCGACCACGCGCGCACTCGCGGTCGTCGGCAGCGAC
CACCCGGTCTACCGCGAGGACGAGGAGACCGCTGCACTCGTCACGCGGCTCGCCCCGAGCTTCGTGCGCTTCGGCTCGTT
CGAGGTGTTCTACTACCGCAACCAGGTCGAGCCGATCCGGCATCTCGCCGATTACGTCATCGCGCGCTACTACCCCGAAC
TCAAGACGCTCGCCGACCCCTACCCCGAGTTCCTGCGCCAGGTTTCGCTGCGCACGGCCGAACTCATGGCGCAATGGCAG
GCGGTCGGCTTCTCGCACGGCGTGATGAACACCGACAACATGTCGATTCTCGGCCTCACGCTCGACTACGGCCCTTTCGG
CTTTCTCGACGCCTTCGACCCCGGCTTCGTCTGCAATCATTCGGACACCGGCGGGCGCTACGCCTTCGACCAGCAGCCAG
ACGTCGCCGCGTGGAATCTCACCAAGCTCGCGCAGGCGCTTGTGCCGCTGATGTCGGTCGAGACCGCGTCGCAGGCGATC
AGCGAGTACCCGCAGGCCTTCGGCCGCGCCTACCTTGCACGGATGGCCGCCAAGTTCGGCCTCGCACCGGGCGACGACAC
CGTGCCCTTGATCACGGACGCGCTACAGCTGCTGGCCGGCAATCGCGTCGACTACACGATCTTCCTGCGCAAACTGTGCG
CTTTCGACAGCCAGGCGGATGCGGGCAACGCACCGCTGCGCGATCTCTTCCTCGACCGCGCCGCGTTCGACGCCTGGGCC
GTGCGCTACGGCGCGGCCTTGCGGCAGCACGGCCAGCCTGACGCCGAACGCGCCGCCACGATGCGCACACGCAATCCGAA
ATACATCCTGCGCAACTACCTCGCGGAGAACGCGATTCGCCGGGCCGCCGATCTGCGCGACTACAGCGAAGTCGAGCGCC
TGCATCGTCTGCTCGCCCGTCCCTTCGACGAACAGCCGGCGTTCGAGGCTTACGCGGCCGAGCCGCCGGACTGGGCGAAA
AGGATCGAAGTAAGCTGCTCTTCGTGA

Upstream 100 bases:

>100_bases
TTGTATGGCGCATGCGAAACCGGCTGACGCCGAGTCTCGCCGCGTTTATCCCCTTCGTCGGCCGGGTCGGGTCCGCGCCG
CGAGCCCGTAGAATTTGCGC

Downstream 100 bases:

>100_bases
AACCGGGTCCTGCCCTCCTTGTCTACCTGCTCGTCGCCGGACTGCTCGCCGCCTGCGGTGGCCAGCCGATTCAGCGCAAG
GATGGCAGCAGCAGCCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MATLESLTFDNGFARLPETYYARVCPTPVPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGH
QFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPYSRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSD
HPVYREDEETAALVTRLAPSFVRFGSFEVFYYRNQVEPIRHLADYVIARYYPELKTLADPYPEFLRQVSLRTAELMAQWQ
AVGFSHGVMNTDNMSILGLTLDYGPFGFLDAFDPGFVCNHSDTGGRYAFDQQPDVAAWNLTKLAQALVPLMSVETASQAI
SEYPQAFGRAYLARMAAKFGLAPGDDTVPLITDALQLLAGNRVDYTIFLRKLCAFDSQADAGNAPLRDLFLDRAAFDAWA
VRYGAALRQHGQPDAERAATMRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAK
RIEVSCSS

Sequences:

>Translated_488_residues
MATLESLTFDNGFARLPETYYARVCPTPVPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGH
QFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPYSRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSD
HPVYREDEETAALVTRLAPSFVRFGSFEVFYYRNQVEPIRHLADYVIARYYPELKTLADPYPEFLRQVSLRTAELMAQWQ
AVGFSHGVMNTDNMSILGLTLDYGPFGFLDAFDPGFVCNHSDTGGRYAFDQQPDVAAWNLTKLAQALVPLMSVETASQAI
SEYPQAFGRAYLARMAAKFGLAPGDDTVPLITDALQLLAGNRVDYTIFLRKLCAFDSQADAGNAPLRDLFLDRAAFDAWA
VRYGAALRQHGQPDAERAATMRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAK
RIEVSCSS
>Mature_487_residues
ATLESLTFDNGFARLPETYYARVCPTPVPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGHQ
FGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPYSRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSDH
PVYREDEETAALVTRLAPSFVRFGSFEVFYYRNQVEPIRHLADYVIARYYPELKTLADPYPEFLRQVSLRTAELMAQWQA
VGFSHGVMNTDNMSILGLTLDYGPFGFLDAFDPGFVCNHSDTGGRYAFDQQPDVAAWNLTKLAQALVPLMSVETASQAIS
EYPQAFGRAYLARMAAKFGLAPGDDTVPLITDALQLLAGNRVDYTIFLRKLCAFDSQADAGNAPLRDLFLDRAAFDAWAV
RYGAALRQHGQPDAERAATMRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAKR
IEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=390, Percent_Identity=46.1538461538462, Blast_Score=312, Evalue=5e-85,
Organism=Escherichia coli, GI1787999, Length=474, Percent_Identity=50.42194092827, Blast_Score=453, Evalue=1e-129,
Organism=Saccharomyces cerevisiae, GI6325034, Length=344, Percent_Identity=37.5, Blast_Score=231, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1019_THIDA (Q3SEY2)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_314777.1
- STRING:   Q3SEY2
- GeneID:   3671244
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_1019
- NMPDR:   fig|292415.3.peg.812
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- PhylomeDB:   Q3SEY2
- BioCyc:   TDEN292415:TBD_1019-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 54286; Mature: 54155

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLESLTFDNGFARLPETYYARVCPTPVPDPYLVCYSPEALSLLDLDATELKRPETIET
CCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHCCCCCHHHH
LAGNRLLPGMDAIAALYAGHQFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPY
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCCC
SRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSDHPVYREDEETAALVTRLAPS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
FVRFGSFEVFYYRNQVEPIRHLADYVIARYYPELKTLADPYPEFLRQVSLRTAELMAQWQ
HHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AVGFSHGVMNTDNMSILGLTLDYGPFGFLDAFDPGFVCNHSDTGGRYAFDQQPDVAAWNL
HHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH
TKLAQALVPLMSVETASQAISEYPQAFGRAYLARMAAKFGLAPGDDTVPLITDALQLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
NRVDYTIFLRKLCAFDSQADAGNAPLRDLFLDRAAFDAWAVRYGAALRQHGQPDAERAAT
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHH
RIEVSCSS
HEECCCCC
>Mature Secondary Structure 
ATLESLTFDNGFARLPETYYARVCPTPVPDPYLVCYSPEALSLLDLDATELKRPETIET
CCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHCCCCCHHHH
LAGNRLLPGMDAIAALYAGHQFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPY
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCCC
SRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAVVGSDHPVYREDEETAALVTRLAPS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
FVRFGSFEVFYYRNQVEPIRHLADYVIARYYPELKTLADPYPEFLRQVSLRTAELMAQWQ
HHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AVGFSHGVMNTDNMSILGLTLDYGPFGFLDAFDPGFVCNHSDTGGRYAFDQQPDVAAWNL
HHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHH
TKLAQALVPLMSVETASQAISEYPQAFGRAYLARMAAKFGLAPGDDTVPLITDALQLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
NRVDYTIFLRKLCAFDSQADAGNAPLRDLFLDRAAFDAWAVRYGAALRQHGQPDAERAAT
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MRTRNPKYILRNYLAENAIRRAADLRDYSEVERLHRLLARPFDEQPAFEAYAAEPPDWAK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHH
RIEVSCSS
HEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA