| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ycdF [H]
Identifier: 74316942
GI number: 74316942
Start: 978929
End: 979711
Strand: Reverse
Name: ycdF [H]
Synonym: Tbd_0924
Alternate gene names: 74316942
Gene position: 979711-978929 (Counterclockwise)
Preceding gene: 74316943
Following gene: 74316941
Centisome position: 33.67
GC content: 67.18
Gene sequence:
>783_bases ATGGACGAACACAGCCTCGCCGGCGCGATCGCCATCGTCACCGGGTCGGACTCGGGGATTGGCCAGGCGACGGCGTTCGA ACTGGCCCGCGCCGGGGCCGACGTCGCCGTCACCTACTTCCACGACCGCGCGGGCGCCGAACGGACGAAGTTCGAGATCG AGGCGGCCGGCCGTCGCGTTTATCTCGCGCAGCTCGACGTGCGCGACCCTGCCCTCGTCGCGGGCTTTTTCGCCGAGGTC AAAACGGAACTCGGAACGCCGACGATACTCGTCAACAACGCCGGCATCGACGCATCGGGGCAACGCGTCGCCGACATGAG CCTCGCGCACTGGGACGACATCCAGCGCACCAATCTCTACGGGCCCTTCTTCACCTGCCAGCAGTTCATCCGCGGGCTCG ACGGCAGCGGCAAGCACGGCACGATCATCAATATCACGAGCGTGCACCAGGAAATTCCGCGCGCGGGGGCGGCGGGCTAC GACGTGTCGAAGGGCGGGCTGCGCAATCTGACGACGACGCTCGCGCTCGAACTCGCCGAGAAGAACATCAACGTCAACAA CATCGCGCCGGGGATGGTGCTGACGCCGATGAACCAGGCCGCGCTCGACGACCCCGCGGTGCTGGAACAGCAGGTGCAGT CGATCCCGATGAAACGGGCCGCGCAGCCGGAGGAGATCGCGCACGTCGCCGTATTCCTCGCGTCCGAGCACGCGCGCTAC ATCCACGGCACGACGATATTCGTCGACGGCGGGCTGACGCTGTTCCAGGGCCAGGGCGCCTAG
Upstream 100 bases:
>100_bases TCCGGCGGGTGGGTCGCCGCTGAACTGGGAGTTCGCTTCCCACGTTGCGCTTCCGAGATTTTCGCTTATGCCTAAGGGAT TCCTTCGGTAGGAGCTTGCC
Downstream 100 bases:
>100_bases ACGTTGCCGCCAGCGTCCGGCGAGTCCGGGCCCGCGACTCGGTAGCCCGCGCGAATCACTCGCTCTGCATGAACCGGAAA CAGCCCGACATCCGCGATCT
Product: 3-oxoacyl-(acyl-carrier protein) reductase
Products: NA
Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MDEHSLAGAIAIVTGSDSGIGQATAFELARAGADVAVTYFHDRAGAERTKFEIEAAGRRVYLAQLDVRDPALVAGFFAEV KTELGTPTILVNNAGIDASGQRVADMSLAHWDDIQRTNLYGPFFTCQQFIRGLDGSGKHGTIINITSVHQEIPRAGAAGY DVSKGGLRNLTTTLALELAEKNINVNNIAPGMVLTPMNQAALDDPAVLEQQVQSIPMKRAAQPEEIAHVAVFLASEHARY IHGTTIFVDGGLTLFQGQGA
Sequences:
>Translated_260_residues MDEHSLAGAIAIVTGSDSGIGQATAFELARAGADVAVTYFHDRAGAERTKFEIEAAGRRVYLAQLDVRDPALVAGFFAEV KTELGTPTILVNNAGIDASGQRVADMSLAHWDDIQRTNLYGPFFTCQQFIRGLDGSGKHGTIINITSVHQEIPRAGAAGY DVSKGGLRNLTTTLALELAEKNINVNNIAPGMVLTPMNQAALDDPAVLEQQVQSIPMKRAAQPEEIAHVAVFLASEHARY IHGTTIFVDGGLTLFQGQGA >Mature_260_residues MDEHSLAGAIAIVTGSDSGIGQATAFELARAGADVAVTYFHDRAGAERTKFEIEAAGRRVYLAQLDVRDPALVAGFFAEV KTELGTPTILVNNAGIDASGQRVADMSLAHWDDIQRTNLYGPFFTCQQFIRGLDGSGKHGTIINITSVHQEIPRAGAAGY DVSKGGLRNLTTTLALELAEKNINVNNIAPGMVLTPMNQAALDDPAVLEQQVQSIPMKRAAQPEEIAHVAVFLASEHARY IHGTTIFVDGGLTLFQGQGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=35.2713178294574, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32.8, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=31.0606060606061, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=30.5220883534137, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=33.1983805668016, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.9212598425197, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=32.3232323232323, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4503301, Length=199, Percent_Identity=29.1457286432161, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI59889578, Length=192, Percent_Identity=32.2916666666667, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=112, Percent_Identity=36.6071428571429, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=28.5171102661597, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=28.125, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=29.1338582677165, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=29.4416243654822, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI4504505, Length=247, Percent_Identity=29.1497975708502, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=38.5542168674699, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=34.9593495934959, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=37.4501992031873, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=35.0597609561753, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=35.15625, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=33.8645418326693, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=31.8897637795276, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=33.4710743801653, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=32.4, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=31.9066147859922, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.5719844357977, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=28.2258064516129, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=29.8913043478261, Blast_Score=75, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=36.9477911646586, Blast_Score=145, Evalue=3e-35, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=37.2, Blast_Score=138, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=30.3501945525292, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.5589353612167, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=30.0813008130081, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=31.1023622047244, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=33.7078651685393, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=31.1355311355311, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17559104, Length=273, Percent_Identity=30.4029304029304, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17560220, Length=275, Percent_Identity=29.8181818181818, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=30.7116104868914, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=29.8892988929889, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=30.3370786516854, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=32.03125, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=28.6259541984733, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=27.5590551181102, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17538182, Length=265, Percent_Identity=30.188679245283, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193204405, Length=271, Percent_Identity=30.2583025830258, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=26.4925373134328, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=26.4705882352941, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=280, Percent_Identity=30, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.9433962264151, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=29.1044776119403, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=26.0377358490566, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=30.03663003663, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=27.037037037037, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=29.7435897435897, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=30.2083333333333, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=31.9444444444444, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=245, Percent_Identity=29.3877551020408, Blast_Score=67, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=194, Percent_Identity=27.319587628866, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=36.2204724409449, Blast_Score=131, Evalue=4e-31, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.0677290836653, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=32.2834645669291, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=30.6513409961686, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.0196078431373, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=29.6, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=28.2352941176471, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=30.5343511450382, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=29.8245614035088, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=202, Percent_Identity=30.6930693069307, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=209, Percent_Identity=29.6650717703349, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 27639; Mature: 27639
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEHSLAGAIAIVTGSDSGIGQATAFELARAGADVAVTYFHDRAGAERTKFEIEAAGRRV CCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCEE YLAQLDVRDPALVAGFFAEVKTELGTPTILVNNAGIDASGQRVADMSLAHWDDIQRTNLY EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEHHHHHHHHCCHHHCCCC GPFFTCQQFIRGLDGSGKHGTIINITSVHQEIPRAGAAGYDVSKGGLRNLTTTLALELAE CCHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH KNINVNNIAPGMVLTPMNQAALDDPAVLEQQVQSIPMKRAAQPEEIAHVAVFLASEHARY CCCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHHCCHHHCCCHHHHHHHHEEEECCCCEE IHGTTIFVDGGLTLFQGQGA EECEEEEEECCEEEEECCCC >Mature Secondary Structure MDEHSLAGAIAIVTGSDSGIGQATAFELARAGADVAVTYFHDRAGAERTKFEIEAAGRRV CCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCEE YLAQLDVRDPALVAGFFAEVKTELGTPTILVNNAGIDASGQRVADMSLAHWDDIQRTNLY EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEHHHHHHHHCCHHHCCCC GPFFTCQQFIRGLDGSGKHGTIINITSVHQEIPRAGAAGYDVSKGGLRNLTTTLALELAE CCHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH KNINVNNIAPGMVLTPMNQAALDDPAVLEQQVQSIPMKRAAQPEEIAHVAVFLASEHARY CCCCCCCCCCCEEECCCCHHHCCCHHHHHHHHHHCCHHHCCCHHHHHHHHEEEECCCCEE IHGTTIFVDGGLTLFQGQGA EECEEEEEECCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9298659 [H]