| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316941
Identifier: 74316941
GI number: 74316941
Start: 977109
End: 978860
Strand: Reverse
Name: 74316941
Synonym: Tbd_0923
Alternate gene names: NA
Gene position: 978860-977109 (Counterclockwise)
Preceding gene: 74316942
Following gene: 74316940
Centisome position: 33.64
GC content: 70.03
Gene sequence:
>1752_bases ATGAACCGGAAACAGCCCGACATCCGCGATCTTGCCGTGATCGGAGACCGCCGCACGGCAGCGCTCGTCGCGACGGACGG CGCCATCGTCTGGTACTGCCCCGAGCGCTTCGACCGCGCTTCGCTGTTCGCGGCGCTGCTCGACCCCGAGCGCGGCGGCG AATGGACGCTCGACCTGCCGGCGGCGCGTCTGGCCACCCGCGCCTACATCGAAGACAGCGCCGTGCTCGAAACCCGCTTC GACCTTGCCCACGGCAGCTTCACGGTCACGGACTGGATGACGGCGGGTGACGTCGGCCCGCGCGGCATCTGCCGCCTGTT TTCTGCGCCGCCGCAAGACGTCGCCATGGCGCTGCGGCCCGCGCCGGGCTACGCGACGCGGACCGCGAGGCTGCGTGCGG TCGACGACGCGGTCTGCATCGACGCGCGCCATTGGCTTTACGGCTCGCATCCGCTCTCGATACGCGAAGGCGGCGTCGGC ATGGAACTGCCCGCGGGACAAGCCGGCTGGGCGGTACTGAGCGACGCACCGCTCGCCGCGCCGAGCCACGCGCAACTAGA AGGATGGCGCGACACCACGCTCGCCGAGTGGCGCGAAATCGCGTCGCAGGTCGCCTACCATGGCCCTTTCGAACGCCAGA TCGCACACTCGCTGCGCGCGCTGCGCCTGCTCACCTACGCGCCCAACGGCGGCATCATCGCGGCGGCGACGGCCTCGCTT CCCGAAATACCGGGCGGCACGCGCAACTACGACTACCGCTACGTCTGGCTGCGCGACGCCGGCATGATCGTCAGCGCACT CGTGCGGGCTGGCAGCCACGGCCCGGACGAGCGTCGCTTCCTCGACTTCATCTGCGGCTCGAAACGGGCCGAGCCCGACA AGCCGCTGCTGCCGCCCTTTCTCTCGCTCGACCTCGAGGCGGCGCCGGGCGTGACCGAGCTCGATCTCGGCGGCTACGCG CACAGCCGCCCGGTGCGCATCGGCAACGGCGCGAACCGCCAGTTGCAGCTCGACGGCTTCGGCAACGTGCTGCTCGCAGC GAAGCTGATCTACGGTCGCCATGACACCCGCGAGCACTGGGAAACCGTGCGCGAGATCGCCGATTTCCTCGCCGCGCACT GGCACGAGCCGGACCACGGAATCTGGGAGGAAAACGTCGCACGCCAGTACACGGTCGGCAAGGTCATCGCCTCGTGCGGC CTGCGCTACATCGCGGACTTTGCCGACGACGCCGCGCAGGCCGAGAAGTGGCGCGCCGCGGCACGCGAGGTCGAGGTCTA CGTCGCGGCGCACTGCATCACTTCCGAGGGCGCCTACGCGGCGTTTGCCGGCTCGGAGGCGGTCGACGTCTCGGCCGTCC TGTTTCCGACCTGGGGCTATGGCGCGCCCGACTCGGCGGAGATGCTCGCGACGCTGCGCGTACTCGAGCGCGACTACGCC CGCGGCGACCTCTACTGGCGCCATCTCGAGGAAGCCGGCGGCCGCGAGGAAGGCGCATTCCTCGCGGGTACGCTGTGGGT CGCGCAATACTGGATTCTGCGCGGCGACCTGCCGCGCGCGCGGCGAATGCTCGAAACCGCGCTCGCTTACGCGACGGACC TGGGTTTCTTCGCCGAGGAGGCCGATCCGCGCTCGGGCGCGATGCTCGGAAACTTTCCCCAGACCTTCGTCCACGCCTCG TTCATCGGCGCGGTCATCGACTACCGGCACGCGCTGGCCGAAGCCGCGAACGCCAAACCCGCTTCCACCTGA
Upstream 100 bases:
>100_bases GGCTGACGCTGTTCCAGGGCCAGGGCGCCTAGACGTTGCCGCCAGCGTCCGGCGAGTCCGGGCCCGCGACTCGGTAGCCC GCGCGAATCACTCGCTCTGC
Downstream 100 bases:
>100_bases AGCGCCGGCGACCCCCGCTGCACGGCGCTGCCTCGGCGCTCGCGGCCCCCACGCCGCTACTCGCTCATGTAGCCCCTGCT CAGTCCGTGAGCCGCATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Glycoside Hydrolase Family Protein; Glucoamylase; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose Phosphatase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glucoamylase-Related Protein Trehalase; Glycosyl Hydrolase Glucoamylase
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS FIGAVIDYRHALAEAANAKPAST
Sequences:
>Translated_583_residues MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS FIGAVIDYRHALAEAANAKPAST >Mature_583_residues MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS FIGAVIDYRHALAEAANAKPAST
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63834; Mature: 63834
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLP CCCCCCCHHHHEEECCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECC AARLATRAYIEDSAVLETRFDLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRP HHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHEEECC APGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVGMELPAGQAGWAVLSDAPLAA CCCCCCCCEEEEECCCHHEECCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCC PSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCCC PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPF CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH LSLDLEAAPGVTELDLGGYAHSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHW HCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHH ETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCGLRYIADFADDAAQAEKWRAA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA HHHEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEE CCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC ADPRSGAMLGNFPQTFVHASFIGAVIDYRHALAEAANAKPAST CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLP CCCCCCCHHHHEEECCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECC AARLATRAYIEDSAVLETRFDLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRP HHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHEEECC APGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVGMELPAGQAGWAVLSDAPLAA CCCCCCCCEEEEECCCHHEECCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCC PSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCCC PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPF CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH LSLDLEAAPGVTELDLGGYAHSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHW HCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHH ETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCGLRYIADFADDAAQAEKWRAA HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA HHHEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEE CCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC ADPRSGAMLGNFPQTFVHASFIGAVIDYRHALAEAANAKPAST CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA