Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316941

Identifier: 74316941

GI number: 74316941

Start: 977109

End: 978860

Strand: Reverse

Name: 74316941

Synonym: Tbd_0923

Alternate gene names: NA

Gene position: 978860-977109 (Counterclockwise)

Preceding gene: 74316942

Following gene: 74316940

Centisome position: 33.64

GC content: 70.03

Gene sequence:

>1752_bases
ATGAACCGGAAACAGCCCGACATCCGCGATCTTGCCGTGATCGGAGACCGCCGCACGGCAGCGCTCGTCGCGACGGACGG
CGCCATCGTCTGGTACTGCCCCGAGCGCTTCGACCGCGCTTCGCTGTTCGCGGCGCTGCTCGACCCCGAGCGCGGCGGCG
AATGGACGCTCGACCTGCCGGCGGCGCGTCTGGCCACCCGCGCCTACATCGAAGACAGCGCCGTGCTCGAAACCCGCTTC
GACCTTGCCCACGGCAGCTTCACGGTCACGGACTGGATGACGGCGGGTGACGTCGGCCCGCGCGGCATCTGCCGCCTGTT
TTCTGCGCCGCCGCAAGACGTCGCCATGGCGCTGCGGCCCGCGCCGGGCTACGCGACGCGGACCGCGAGGCTGCGTGCGG
TCGACGACGCGGTCTGCATCGACGCGCGCCATTGGCTTTACGGCTCGCATCCGCTCTCGATACGCGAAGGCGGCGTCGGC
ATGGAACTGCCCGCGGGACAAGCCGGCTGGGCGGTACTGAGCGACGCACCGCTCGCCGCGCCGAGCCACGCGCAACTAGA
AGGATGGCGCGACACCACGCTCGCCGAGTGGCGCGAAATCGCGTCGCAGGTCGCCTACCATGGCCCTTTCGAACGCCAGA
TCGCACACTCGCTGCGCGCGCTGCGCCTGCTCACCTACGCGCCCAACGGCGGCATCATCGCGGCGGCGACGGCCTCGCTT
CCCGAAATACCGGGCGGCACGCGCAACTACGACTACCGCTACGTCTGGCTGCGCGACGCCGGCATGATCGTCAGCGCACT
CGTGCGGGCTGGCAGCCACGGCCCGGACGAGCGTCGCTTCCTCGACTTCATCTGCGGCTCGAAACGGGCCGAGCCCGACA
AGCCGCTGCTGCCGCCCTTTCTCTCGCTCGACCTCGAGGCGGCGCCGGGCGTGACCGAGCTCGATCTCGGCGGCTACGCG
CACAGCCGCCCGGTGCGCATCGGCAACGGCGCGAACCGCCAGTTGCAGCTCGACGGCTTCGGCAACGTGCTGCTCGCAGC
GAAGCTGATCTACGGTCGCCATGACACCCGCGAGCACTGGGAAACCGTGCGCGAGATCGCCGATTTCCTCGCCGCGCACT
GGCACGAGCCGGACCACGGAATCTGGGAGGAAAACGTCGCACGCCAGTACACGGTCGGCAAGGTCATCGCCTCGTGCGGC
CTGCGCTACATCGCGGACTTTGCCGACGACGCCGCGCAGGCCGAGAAGTGGCGCGCCGCGGCACGCGAGGTCGAGGTCTA
CGTCGCGGCGCACTGCATCACTTCCGAGGGCGCCTACGCGGCGTTTGCCGGCTCGGAGGCGGTCGACGTCTCGGCCGTCC
TGTTTCCGACCTGGGGCTATGGCGCGCCCGACTCGGCGGAGATGCTCGCGACGCTGCGCGTACTCGAGCGCGACTACGCC
CGCGGCGACCTCTACTGGCGCCATCTCGAGGAAGCCGGCGGCCGCGAGGAAGGCGCATTCCTCGCGGGTACGCTGTGGGT
CGCGCAATACTGGATTCTGCGCGGCGACCTGCCGCGCGCGCGGCGAATGCTCGAAACCGCGCTCGCTTACGCGACGGACC
TGGGTTTCTTCGCCGAGGAGGCCGATCCGCGCTCGGGCGCGATGCTCGGAAACTTTCCCCAGACCTTCGTCCACGCCTCG
TTCATCGGCGCGGTCATCGACTACCGGCACGCGCTGGCCGAAGCCGCGAACGCCAAACCCGCTTCCACCTGA

Upstream 100 bases:

>100_bases
GGCTGACGCTGTTCCAGGGCCAGGGCGCCTAGACGTTGCCGCCAGCGTCCGGCGAGTCCGGGCCCGCGACTCGGTAGCCC
GCGCGAATCACTCGCTCTGC

Downstream 100 bases:

>100_bases
AGCGCCGGCGACCCCCGCTGCACGGCGCTGCCTCGGCGCTCGCGGCCCCCACGCCGCTACTCGCTCATGTAGCCCCTGCT
CAGTCCGTGAGCCGCATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Glycoside Hydrolase Family Protein; Glucoamylase; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose Phosphatase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glucoamylase-Related Protein Trehalase; Glycosyl Hydrolase Glucoamylase

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF
DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG
MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL
PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA
HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG
LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA
RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS
FIGAVIDYRHALAEAANAKPAST

Sequences:

>Translated_583_residues
MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF
DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG
MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL
PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA
HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG
LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA
RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS
FIGAVIDYRHALAEAANAKPAST
>Mature_583_residues
MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLPAARLATRAYIEDSAVLETRF
DLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRPAPGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVG
MELPAGQAGWAVLSDAPLAAPSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL
PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPFLSLDLEAAPGVTELDLGGYA
HSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHWETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCG
LRYIADFADDAAQAEKWRAAAREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA
RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEEADPRSGAMLGNFPQTFVHAS
FIGAVIDYRHALAEAANAKPAST

Specific function: Unknown

COG id: COG3387

COG function: function code G; Glucoamylase and related glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63834; Mature: 63834

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLP
CCCCCCCHHHHEEECCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECC
AARLATRAYIEDSAVLETRFDLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRP
HHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHEEECC
APGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVGMELPAGQAGWAVLSDAPLAA
CCCCCCCCEEEEECCCHHEECCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCC
PSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCCC
PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPF
CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
LSLDLEAAPGVTELDLGGYAHSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHW
HCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHH
ETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCGLRYIADFADDAAQAEKWRAA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA
HHHEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEE
CCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
ADPRSGAMLGNFPQTFVHASFIGAVIDYRHALAEAANAKPAST
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRKQPDIRDLAVIGDRRTAALVATDGAIVWYCPERFDRASLFAALLDPERGGEWTLDLP
CCCCCCCHHHHEEECCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECC
AARLATRAYIEDSAVLETRFDLAHGSFTVTDWMTAGDVGPRGICRLFSAPPQDVAMALRP
HHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHEEECC
APGYATRTARLRAVDDAVCIDARHWLYGSHPLSIREGGVGMELPAGQAGWAVLSDAPLAA
CCCCCCCCEEEEECCCHHEECCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCC
PSHAQLEGWRDTTLAEWREIASQVAYHGPFERQIAHSLRALRLLTYAPNGGIIAAATASL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCCEEEEECCCC
PEIPGGTRNYDYRYVWLRDAGMIVSALVRAGSHGPDERRFLDFICGSKRAEPDKPLLPPF
CCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
LSLDLEAAPGVTELDLGGYAHSRPVRIGNGANRQLQLDGFGNVLLAAKLIYGRHDTREHW
HCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHH
ETVREIADFLAAHWHEPDHGIWEENVARQYTVGKVIASCGLRYIADFADDAAQAEKWRAA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AREVEVYVAAHCITSEGAYAAFAGSEAVDVSAVLFPTWGYGAPDSAEMLATLRVLERDYA
HHHEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RGDLYWRHLEEAGGREEGAFLAGTLWVAQYWILRGDLPRARRMLETALAYATDLGFFAEE
CCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
ADPRSGAMLGNFPQTFVHASFIGAVIDYRHALAEAANAKPAST
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA