Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is norD [H]

Identifier: 74316886

GI number: 74316886

Start: 917132

End: 919249

Strand: Reverse

Name: norD [H]

Synonym: Tbd_0868

Alternate gene names: 74316886

Gene position: 919249-917132 (Counterclockwise)

Preceding gene: 74316887

Following gene: 74316885

Centisome position: 31.59

GC content: 67.42

Gene sequence:

>2118_bases
ATGGCGCGGCCGCCGCTTTCCGCCGCCGACATGGAAGCCAGCCTCCATACCTGGCTGGAAACCGAGTTCACCTACTTCAA
GGTCGAGGAGCTGGCCGGCGAACTCGCGGCGCTTGCGCGCGACGACCAGGACTTCATCCTCGGCTGGATCCGGCGGATCG
CGTCGACGCACATCACGCTCGCCTGGCAATTCGGACGCCGCGCGCCGGCCCTGTTGCCGCGCATGGAACGGCGCCTGCTC
GAGGCATGGGCCGTGCACACCTGCGACGTCTTCGACCGCACCGGCCTGCAGACCGCGCTCCGGGTCATGGAGCAGGTCGA
CAGCTTCGACCCGGCGCAGCACAAACACGACGCCGCCGGCGCACTGTTCGAGGATTTTGCGCCGGTCCTCGGCAATTTCG
TCTGCGGCCTGTCGGGACGCCGGTTGCGCATCGAGGAAGGCGACAAGGCATGGACCGACGGCGAACGGATCGTGCTGCCG
CCGCTCGTCGCCGAATTTTCCGACCGCGACGACAACTTTCAGCTCGCCAAGGTCATGGTCGCGCTCGCCTGGGCGCAGAC
CCGCTTCGGCACCTTGCGCGTCGACCATGCGCAGATCGCGGCGGGCTATGCCGACCCCGAGCGCGCGTTGAGCCGGCTCA
ACGCGCTCGAGACGCTTCGCTTGAGCGCCCGCATCGCGCGCGACCTGCCGGGACTCCACCGCGAGATGCAGCGTCTGGCG
CGCGTCGCCGAGCCTCTGACTCCCGCGTGGCAGGCCTTCGCGGCGCGGCTCACGCGGGACGATGCGAGCATCGACGACAG
CCTCGCGCTTCTCGCTGCGGCTTACGCCGAACCTGAGTCTCCGCGCTGGACTGGTCAGCTCGACCTGCGCCCCGACGCCG
TCGCCGCGGCCCGCGCGGCACGCCTGGACAAGGAAAAGGCGCGGCTGCGCGTGCGGCTCGCCGAACTCCTCGAGGAGCAG
GCCGAAAACCGCGCGTCGGCCGCTTCCCAAGATACGCATCCGCCAGCGGCCGAGGTCGAGCCGCGCGACGAAGGCGGCCA
GCTCGACTTCGACATCACGCTCGACGGCGTTCCGCTCGCGCCGCCCGACGACGTCCGCCAACTGCTCACCTCGGTCTACC
TCGATTTCGGCGAGATCCCACCCGAATACCTCACGCCGGCCGGCGAGGGCGAATACGATCCCAACCTGGTCTTCGACCGG
CCCGAGGACCCCGACGCGGTGTGGCACGGCACCTATCACGAGAAAGGCGCGGAACTGTATCCGGAATGGGATCACGGCCG
TCAGCATTACCGCAAGAACTGGTGCGTGATGCGGGAAAAGACCGTGCCGCCGATCCAGGACGATTTCTACCGCCAGACGC
TGGTCAAGCATCAAGGCGCGGTCAAGCAGCTGCGCCGGAAATTCGAAGCCCTGCGCGACGAGAACCGGCTCGACCGGCGA
CAGACGCAGGGCGACGAGATCGACCTCGACGCGCTGGTCGAGGCCCTCGCCGACGCGAAGGACGGACGCGAAATGAGCGA
CCGGCTGTTCGTCCGGCTGCACCGCGCCGAACGCAACATCGCCGTCGCGTTCCTGGTCGACATGAGCGGCTCGACCAAAG
GCTGGATCAACGAGGCCGAACGCGAGGCGCTGATCCTGCTGTGCGAAGCCCTCGAACTGCTCGGCGACCGCTACGCGATC
TACGGTTTCTCGGGCACCACGCGCAAACGCTGCGAACTCTTCCGGATCAAGACCTTCGACGAGCCCTATGACGACGAGGT
GAAGGCGCGCATCTCTGGGATACGCCCGCAGGAATACACGCGCATGGGCTTCGCGCTGCGTCACCTCAGCAAACTGCTCA
ACCAGGTCGACGCTCGGACCCGGGTGCTCGTGACGCTTTCGGACGGCCGTCCGGACGATTACTTCGACGTCTACCGCGGC
GAGTACGGTGTCGAGGACACGCGCATGGCGCTGCTCGAGGCGAGCCGGACCGGCATCCACCCCTTCTGCATCACGCTCGA
CCGCGAGGCGCGCGATTACCTTCCGCACATGTACGGCGCCGCGCGCTACGTCCTTCTCGACGACGTGCGACAATTGCCGC
TCAAGGTCACCGACATCTATCGACGCATCACGACATGA

Upstream 100 bases:

>100_bases
TCAGCCCGGTTACGGCGTGCAAATCGGCCGTCGCACAAGCGGTGACGGACGACGCGGACATGCTCAAGGCGATTCAGGAA
CTCTCCTCGTCCGTCTTCTG

Downstream 100 bases:

>100_bases
GCCTGGACGAACTCAAGGTAGGCTGTTTCTACAGCAACGGCGCCTACGGCAGGACCTGGGGCGTGCGTCAGCTCCTCGAA
ATCCTGACCGACGATGGCAG

Product: nitric oxide reductase activation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLL
EAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLP
PLVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA
RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQ
AENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDR
PEDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR
QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAI
YGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRG
EYGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT

Sequences:

>Translated_705_residues
MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLL
EAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLP
PLVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA
RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQ
AENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDR
PEDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR
QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAI
YGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRG
EYGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT
>Mature_704_residues
ARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITLAWQFGRRAPALLPRMERRLLE
AWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAGALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPP
LVAEFSDRDDNFQLAKVMVALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLAR
VAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAARLDKEKARLRVRLAELLEEQA
ENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLAPPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRP
EDPDAVWHGTYHEKGAELYPEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRRQ
TQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAEREALILLCEALELLGDRYAIY
GFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYTRMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGE
YGVEDTRMALLEASRTGIHPFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT

Specific function: Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification) [H]

COG id: COG4548

COG function: function code P; Nitric oxide reductase activation protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002035 [H]

Pfam domain/function: PF00092 VWA [H]

EC number: NA

Molecular weight: Translated: 80258; Mature: 80126

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITL
CCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEEE
AWQFGRRAPALLPRMERRLLEAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH
ALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPPLVAEFSDRDDNFQLAKVMV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHH
ALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA
HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAA
HHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
RLDKEKARLRVRLAELLEEQAENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
PPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRPEDPDAVWHGTYHEKGAELY
CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCCCCCCCEECCCHHCCCCCCC
PEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR
CCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAE
HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH
REALILLCEALELLGDRYAIYGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYT
HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHHCCCCCHHHH
RMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGEYGVEDTRMALLEASRTGIH
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCC
PFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
ARPPLSAADMEASLHTWLETEFTYFKVEELAGELAALARDDQDFILGWIRRIASTHITL
CCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEEEE
AWQFGRRAPALLPRMERRLLEAWAVHTCDVFDRTGLQTALRVMEQVDSFDPAQHKHDAAG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH
ALFEDFAPVLGNFVCGLSGRRLRIEEGDKAWTDGERIVLPPLVAEFSDRDDNFQLAKVMV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECHHHHHCCCCCCCHHHHHHHH
ALAWAQTRFGTLRVDHAQIAAGYADPERALSRLNALETLRLSARIARDLPGLHREMQRLA
HHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
RVAEPLTPAWQAFAARLTRDDASIDDSLALLAAAYAEPESPRWTGQLDLRPDAVAAARAA
HHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
RLDKEKARLRVRLAELLEEQAENRASAASQDTHPPAAEVEPRDEGGQLDFDITLDGVPLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
PPDDVRQLLTSVYLDFGEIPPEYLTPAGEGEYDPNLVFDRPEDPDAVWHGTYHEKGAELY
CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCCCCCCCEECCCHHCCCCCCC
PEWDHGRQHYRKNWCVMREKTVPPIQDDFYRQTLVKHQGAVKQLRRKFEALRDENRLDRR
CCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTQGDEIDLDALVEALADAKDGREMSDRLFVRLHRAERNIAVAFLVDMSGSTKGWINEAE
HCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHH
REALILLCEALELLGDRYAIYGFSGTTRKRCELFRIKTFDEPYDDEVKARISGIRPQEYT
HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEEEECCCCCCCHHHHHHHCCCCCHHHH
RMGFALRHLSKLLNQVDARTRVLVTLSDGRPDDYFDVYRGEYGVEDTRMALLEASRTGIH
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCC
PFCITLDREARDYLPHMYGAARYVLLDDVRQLPLKVTDIYRRITT
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11274111; 7508388 [H]