| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yaeL [C]
Identifier: 74316810
GI number: 74316810
Start: 834357
End: 835721
Strand: Direct
Name: yaeL [C]
Synonym: Tbd_0792
Alternate gene names: 74316810
Gene position: 834357-835721 (Clockwise)
Preceding gene: 74316809
Following gene: 74316811
Centisome position: 28.67
GC content: 66.52
Gene sequence:
>1365_bases GTGCAGCTACGCATGAATCTGCTGACGACCCTGCTGTGGTTTCTGCTCGCCATCGGTATCCTCGTTGTGGCGCACGAGCT CGGCCATTATTTCGCGGCGCGTCTGGCCGGCGTGAAGGTGTTGCGTTTTTCGGTCGGTTTCGGCAGGCCCCTGTTCAGTC GGCGCCTCGGGCGCGACCGCACCGAATGGACCGTATCGGCCCTGCCGTTCGGCGGCTACGTCAAGATGCTCGACGAGCGC GAAGGCGAGGTCCCCGCTGCCGAGGCGCACCGTAGTTTCAATCGCGCAACCGTCTGGCGCCGTATCGGGATCGTCGTCGC CGGGCCCACGGCCAATTTCCTGCTCGCCATCGTTTTCTATTGGGCGCTCTTCGTGCACGGCGTGCCGGCGATGAAGCCGC TGATCGGCGAGCCGCCGGCGGGCACGCCCGCGGCGCACGCGGGGCTCGCCGCCGGCGACGAGATTCGCAGCGTCAACGGT GTCGAGACGCCGTCGTTCCAGGACCTGCGCCTCAACCTGCTGCGTGCCGGCGTGGCCGGCGGTACGCTCGAGCTCGCGCT CGCCGACGGGCGCAGCGCACGGCTCGAGGTGTCGCCGCTCGAAACCGAAAACCTCGAGCGCGACGCGCTGACGCCGCTCG GCATCGTGCGCTACGACCCCGATATCGCGCCCGTGATCGGGGAGGTGTTGCCCGACGGTGCCGCGGCGCGCGCCGGATTC AAGCGCTGGGACCGGCTGATCGCCGCCGACGGCGAGGCGATCGCAACCTGGCAGGGGTGGGTCGAAGTCGTGCGTGCGCA TCCGTCCAGGCCCTTGCGCATCGATTATCAGCGCGACGGCGAACGCCGCGTGTCGACGGTGACGCCCGACGCGGTCGACG AGGCGGGCAAGCGCGTCGGCAAGATCGGCGCAGGTCCGCATGTCGATCCCGCCGTATTCGATGCGCTGATGACCGAACTG CATTACGGCCCGGTCGAGGCCTTGTGGCAAGGCGCCGGCAAGACCTGGGACATGACCGTGTTCACGCTCGAGATGATGGG CCGCATGGTGCTCGGCCAGGTGTCGTGGAAGAACCTGTCCGGACCCTTGACCATCGCCGATTACGCGGGCCAGAGCGCCG ACCTCGGATGGATCAGTTTCGTCGGTTTTCTCGCGCTCGTGAGCGTGAGTCTCGGGGTGCTGAACCTGCTGCCAATCCCG CTGTTGGACGGTGGACACCTCATGTATTATGTCGCGGAAGTTTTTCGCGGTCGGCCGGTGTCCGAGCGCGCCATGGAAAT AGGGAGCCGGATCGGCATGGCGCTTCTGCTGTTGCTGATGTCGTTCGCCCTCTTCAACGATTTGCAACGTCTAATAAGCG GATGA
Upstream 100 bases:
>100_bases CCCACGCCCTCGATGCGGTGGCCGGGGGGCGCGCCGACACGCTCGACGAGCTGCTCGACGCCGACCACCGGGCGCGTCGC GTCGCCGACGACTATCTCAG
Downstream 100 bases:
>100_bases AAAAACCCATGACCCTGACCCGTCTGACGCTGGCCCTCGCTGCGGTATTCGTCACGCATGCCGCATCCGCCGAGGCGCCT TTCGTCGTCAAGGACATCCG
Product: peptidase M50 membrane-associated zinc metallopeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MQLRMNLLTTLLWFLLAIGILVVAHELGHYFAARLAGVKVLRFSVGFGRPLFSRRLGRDRTEWTVSALPFGGYVKMLDER EGEVPAAEAHRSFNRATVWRRIGIVVAGPTANFLLAIVFYWALFVHGVPAMKPLIGEPPAGTPAAHAGLAAGDEIRSVNG VETPSFQDLRLNLLRAGVAGGTLELALADGRSARLEVSPLETENLERDALTPLGIVRYDPDIAPVIGEVLPDGAAARAGF KRWDRLIAADGEAIATWQGWVEVVRAHPSRPLRIDYQRDGERRVSTVTPDAVDEAGKRVGKIGAGPHVDPAVFDALMTEL HYGPVEALWQGAGKTWDMTVFTLEMMGRMVLGQVSWKNLSGPLTIADYAGQSADLGWISFVGFLALVSVSLGVLNLLPIP LLDGGHLMYYVAEVFRGRPVSERAMEIGSRIGMALLLLLMSFALFNDLQRLISG
Sequences:
>Translated_454_residues MQLRMNLLTTLLWFLLAIGILVVAHELGHYFAARLAGVKVLRFSVGFGRPLFSRRLGRDRTEWTVSALPFGGYVKMLDER EGEVPAAEAHRSFNRATVWRRIGIVVAGPTANFLLAIVFYWALFVHGVPAMKPLIGEPPAGTPAAHAGLAAGDEIRSVNG VETPSFQDLRLNLLRAGVAGGTLELALADGRSARLEVSPLETENLERDALTPLGIVRYDPDIAPVIGEVLPDGAAARAGF KRWDRLIAADGEAIATWQGWVEVVRAHPSRPLRIDYQRDGERRVSTVTPDAVDEAGKRVGKIGAGPHVDPAVFDALMTEL HYGPVEALWQGAGKTWDMTVFTLEMMGRMVLGQVSWKNLSGPLTIADYAGQSADLGWISFVGFLALVSVSLGVLNLLPIP LLDGGHLMYYVAEVFRGRPVSERAMEIGSRIGMALLLLLMSFALFNDLQRLISG >Mature_454_residues MQLRMNLLTTLLWFLLAIGILVVAHELGHYFAARLAGVKVLRFSVGFGRPLFSRRLGRDRTEWTVSALPFGGYVKMLDER EGEVPAAEAHRSFNRATVWRRIGIVVAGPTANFLLAIVFYWALFVHGVPAMKPLIGEPPAGTPAAHAGLAAGDEIRSVNG VETPSFQDLRLNLLRAGVAGGTLELALADGRSARLEVSPLETENLERDALTPLGIVRYDPDIAPVIGEVLPDGAAARAGF KRWDRLIAADGEAIATWQGWVEVVRAHPSRPLRIDYQRDGERRVSTVTPDAVDEAGKRVGKIGAGPHVDPAVFDALMTEL HYGPVEALWQGAGKTWDMTVFTLEMMGRMVLGQVSWKNLSGPLTIADYAGQSADLGWISFVGFLALVSVSLGVLNLLPIP LLDGGHLMYYVAEVFRGRPVSERAMEIGSRIGMALLLLLMSFALFNDLQRLISG
Specific function: Unknown
COG id: COG0750
COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1786373, Length=451, Percent_Identity=40.3547671840355, Blast_Score=329, Evalue=2e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR004387 - InterPro: IPR008915 [H]
Pfam domain/function: PF00595 PDZ; PF02163 Peptidase_M50 [H]
EC number: NA
Molecular weight: Translated: 49374; Mature: 49374
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLRMNLLTTLLWFLLAIGILVVAHELGHYFAARLAGVKVLRFSVGFGRPLFSRRLGRDR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCCCC TEWTVSALPFGGYVKMLDEREGEVPAAEAHRSFNRATVWRRIGIVVAGPTANFLLAIVFY CCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH WALFVHGVPAMKPLIGEPPAGTPAAHAGLAAGDEIRSVNGVETPSFQDLRLNLLRAGVAG HHHHHCCCCHHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCC GTLELALADGRSARLEVSPLETENLERDALTPLGIVRYDPDIAPVIGEVLPDGAAARAGF CEEEEEEECCCCCEEEECCCCCCCCCHHCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHH KRWDRLIAADGEAIATWQGWVEVVRAHPSRPLRIDYQRDGERRVSTVTPDAVDEAGKRVG HHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHH KIGAGPHVDPAVFDALMTELHYGPVEALWQGAGKTWDMTVFTLEMMGRMVLGQVSWKNLS CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC GPLTIADYAGQSADLGWISFVGFLALVSVSLGVLNLLPIPLLDGGHLMYYVAEVFRGRPV CCEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC SERAMEIGSRIGMALLLLLMSFALFNDLQRLISG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQLRMNLLTTLLWFLLAIGILVVAHELGHYFAARLAGVKVLRFSVGFGRPLFSRRLGRDR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCCCC TEWTVSALPFGGYVKMLDEREGEVPAAEAHRSFNRATVWRRIGIVVAGPTANFLLAIVFY CCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHH WALFVHGVPAMKPLIGEPPAGTPAAHAGLAAGDEIRSVNGVETPSFQDLRLNLLRAGVAG HHHHHCCCCHHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCC GTLELALADGRSARLEVSPLETENLERDALTPLGIVRYDPDIAPVIGEVLPDGAAARAGF CEEEEEEECCCCCEEEECCCCCCCCCHHCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHH KRWDRLIAADGEAIATWQGWVEVVRAHPSRPLRIDYQRDGERRVSTVTPDAVDEAGKRVG HHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHH KIGAGPHVDPAVFDALMTELHYGPVEALWQGAGKTWDMTVFTLEMMGRMVLGQVSWKNLS CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC GPLTIADYAGQSADLGWISFVGFLALVSVSLGVLNLLPIPLLDGGHLMYYVAEVFRGRPV CCEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC SERAMEIGSRIGMALLLLLMSFALFNDLQRLISG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]