| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316660
Identifier: 74316660
GI number: 74316660
Start: 680425
End: 681030
Strand: Reverse
Name: 74316660
Synonym: Tbd_0642
Alternate gene names: NA
Gene position: 681030-680425 (Counterclockwise)
Preceding gene: 74316661
Following gene: 74316659
Centisome position: 23.4
GC content: 65.84
Gene sequence:
>606_bases ATGATTTCGCATGAAAGCATTGAAAAGAACCTCGGTCTGCTGATCGTGCTGACCATCCTGATCGTCAGCGTCGGCGGCCT GGTGCAGATCGTTCCGCTGTTCTTCCAGACGTCGACGACGACGGCGGTCGCGGGCCTCAAGCCCTACACCCCGCTTCAAC TCTCGGGGCGCGACATCTACATCCGCGAGGGCTGCGTCGGCTGCCACTCGCAGATGGTGCGCCCGTTCCGCGCCGAGACC GAGCGCTACGGCCATTATTCGGTGGCCGGCGAGTTCGTCTACGACCGTCCCTTCCTCTGGGGTTCGAAGCGCACGGGGCC GGATCTGCAGCGCGTCGGCGGACGCTATTCCGACGCCTGGCACGTCGCCCACCTGATGAACCCGCGCGACGTCGTACCCG AGTCGAACATGCCGGCCTACCCTTGGCTCGACCGCCCGCTCGACGCGTCGGCGATCCAGACCAAGATGCGCCGGCTCAAT CTGGTCGGCCACGGCTACACGGACAAGGAGATCGCCGAGGCGCCGGCCGCGCTCGAAGGCAAGACCGAACTCGAGGCCGT GATCGCCTACCTGCAGGTGCTCGGCACCCACGCGCCGAAGAACTGA
Upstream 100 bases:
>100_bases TGCTGATGATGGCGTACAACGTCTGGCAGACCGTCCGCGTCGGCCGCGTCGTCAACGACGCCCCGATCCCGCAAGCCGTC CACGCCTAAGGAGACCGACC
Downstream 100 bases:
>100_bases GAACACCCATGGACAGCGGCTTCATCAGCGGCATCGTCACGGTGATCTTCATCGTGGTGTTCATCGGTATCGTCTGGTGG GCTTTCAGCAAGGGCAACAA
Product: cytochrome C oxidase, mono-heme subunit/FixO
Products: ferricytochrome c; H2O
Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit II; Cytochrome C Oxidase Mono-Heme Subunit/FixO; Cytochrome C Oxidase Cbb3-Type Subunit I; Cb-Type Cytochrome C Oxidase Subunit II; Cbb3-Type Cytochrome Oxidase Cytochrome C Subunit; Bifunctional Cbb3-Type Cytochrome C Oxidase Subunit I/II; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit CcoO; Cytochrome Oxidase Subunit; Cytochrome C Oxidase Subunit; Cytochrome-C Oxidase FixO Chain; Cytochrome-C Oxidase Subunit II; Bifunctional Cytochrome C Oxidase Subunit SccoN/O; Transmembrane Cytochrome C Oxidase FixO Protein; Cytochrome-Cbb3 Oxidase Subunit I; Cbb3-Type Cytochrome Oxidase; Cbb3-Type Cytochrome C Oxidase Subunit CcoO; Cbb3-Type Cytochrome C Oxidase Subunit I + II; Cytochrome Oxidase; Cytochrome C Oxidase Mono-Heme Subunit; Cytochrome C Oxidase Cbb3-Type; Cytochrome C Oxidase Cbb3-Type Mono-Heme Subunit II; Cytochrome Cbb3 Oxidase Subunit I/III; Cytochrome Oxidase Cytochrome C Subunit; Cytochrome C Oxidase Family Protein; Cytochrome C Oxidase Subunit CcoN; Cytochrome C Oxidase Cbb3-Type Subunit I/Mono-Heme Subunit; Cytochrome C Oxidase FixO Chain; Cytochrome C Oxidase Mono-Heme Subunit/FixO Superfamily; Cytochrome-Cbb3 Oxidase Subunit II; Cytochrome C Family Protein; Cytochrome C Oxidase CcoO Subunit; Cbb3-Type Cytochrome C Oxidase Subunits CcoN/CcoO; Cytochrome C Oxidase Cbb3-Type Subunit I And II
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MISHESIEKNLGLLIVLTILIVSVGGLVQIVPLFFQTSTTTAVAGLKPYTPLQLSGRDIYIREGCVGCHSQMVRPFRAET ERYGHYSVAGEFVYDRPFLWGSKRTGPDLQRVGGRYSDAWHVAHLMNPRDVVPESNMPAYPWLDRPLDASAIQTKMRRLN LVGHGYTDKEIAEAPAALEGKTELEAVIAYLQVLGTHAPKN
Sequences:
>Translated_201_residues MISHESIEKNLGLLIVLTILIVSVGGLVQIVPLFFQTSTTTAVAGLKPYTPLQLSGRDIYIREGCVGCHSQMVRPFRAET ERYGHYSVAGEFVYDRPFLWGSKRTGPDLQRVGGRYSDAWHVAHLMNPRDVVPESNMPAYPWLDRPLDASAIQTKMRRLN LVGHGYTDKEIAEAPAALEGKTELEAVIAYLQVLGTHAPKN >Mature_201_residues MISHESIEKNLGLLIVLTILIVSVGGLVQIVPLFFQTSTTTAVAGLKPYTPLQLSGRDIYIREGCVGCHSQMVRPFRAET ERYGHYSVAGEFVYDRPFLWGSKRTGPDLQRVGGRYSDAWHVAHLMNPRDVVPESNMPAYPWLDRPLDASAIQTKMRRLN LVGHGYTDKEIAEAPAALEGKTELEAVIAYLQVLGTHAPKN
Specific function: Unknown
COG id: COG2993
COG function: function code C; Cbb3-type cytochrome oxidase, cytochrome c subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.9.3.1
Molecular weight: Translated: 22316; Mature: 22316
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISHESIEKNLGLLIVLTILIVSVGGLVQIVPLFFQTSTTTAVAGLKPYTPLQLSGRDIY CCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCCCCCEEECCCEEE IREGCVGCHSQMVRPFRAETERYGHYSVAGEFVYDRPFLWGSKRTGPDLQRVGGRYSDAW EECCCHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCEECCCCCCCCHHHHHCCCCCCHH HVAHLMNPRDVVPESNMPAYPWLDRPLDASAIQTKMRRLNLVGHGYTDKEIAEAPAALEG HHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC KTELEAVIAYLQVLGTHAPKN HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MISHESIEKNLGLLIVLTILIVSVGGLVQIVPLFFQTSTTTAVAGLKPYTPLQLSGRDIY CCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCCCCCEEECCCEEE IREGCVGCHSQMVRPFRAETERYGHYSVAGEFVYDRPFLWGSKRTGPDLQRVGGRYSDAW EECCCHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCEECCCCCCCCHHHHHCCCCCCHH HVAHLMNPRDVVPESNMPAYPWLDRPLDASAIQTKMRRLNLVGHGYTDKEIAEAPAALEG HHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC KTELEAVIAYLQVLGTHAPKN HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ferrocytochrome c; O2
Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA