Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 74316633

GI number: 74316633

Start: 644382

End: 645164

Strand: Direct

Name: yjfH [C]

Synonym: Tbd_0615

Alternate gene names: 74316633

Gene position: 644382-645164 (Clockwise)

Preceding gene: 74316631

Following gene: 74316636

Centisome position: 22.15

GC content: 73.05

Gene sequence:

>783_bases
ATGACCGAAACCGCCATCCGCTCACGCGACAATCCGATCTTCAAACGCCTGAAGAAGCTCGCCGAATCGAGTCGCGCGCG
GCGCGAGGCCAGGATGACGCTGCTCGACGGCGAACATCTGCTGGCGGCCTACCTCGCCGCGGGCGGCACGCCGCACACGC
TGGTGCGCGCCGAGTCCTGCGACGCCGCGCGCCTCGCCGCCGTCGCCGACTGCCGGCAGGCCAAGACGGTCGTCGTGCCG
GACGCGCTTTTCGCCGAACTCGCGCCGGTCGCGACGCCGACCGGCGTGCTGGCCGAGGCCGCCTGGCTGACGCCGCAGGC
GCCCGTCGACCTTGCGCTCGTCGTCGTGCTCGAAGACATCCAGGACCCCGGCAACCTGGGCGCGATGCTGCGCACCGCTG
CGGCCGCTGGCGCCACGCTCGCCGTGCTGTCGAAGGGCTGTCACGATGCCTGGTCGCCGAAGGCGCTGCGCGGCGGGCAG
GGCGCGCAGTTCGTACTGCCGATGCAGCTTGCCGCCGACCCGGGCAGCTGGCTGCGCGATTTCTCCGGCACGAGCGTCGC
GCTGGCGCCCGAGGCGGCGCACGATCTTTACACGCTGGACTACACTGGGCCTACGGCGCTAGTCGTCGGCAACGAGGGGG
CGGGGCTGAGCGCGGCGACACTGGCGGCGGCGACGACGCGCGCACGCATCCCGATGCCGGGGCGGGTCGAATCGCTCAAT
GCCTCGGCCGCGCTCGCCGTCGCGGTGTTCGAGGCGCTGCGGCAGCGCGGCGTTCGCCGCTAG

Upstream 100 bases:

>100_bases
TGCCAGTTGCCGTTGCGATGCTCCCGGCCGTAAGGGGTGATGAGGGCGATGCGCATGGCTTCCAGTGTAGCGTGCGCAAC
GGATCGCGGATAATTCGAGG

Downstream 100 bases:

>100_bases
GCCACGGCGCCGCCGAGCACTTCGTGCCAGTCGCGGCGCAGCAGCGCGGTCAACTGCTCGGCCGCGACCGGCTTGCTGAC
GAGATAACCCTGGACGATGC

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAARLAAVADCRQAKTVVVP
DALFAELAPVATPTGVLAEAAWLTPQAPVDLALVVVLEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQ
GAQFVLPMQLAADPGSWLRDFSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN
ASAALAVAVFEALRQRGVRR

Sequences:

>Translated_260_residues
MTETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAARLAAVADCRQAKTVVVP
DALFAELAPVATPTGVLAEAAWLTPQAPVDLALVVVLEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQ
GAQFVLPMQLAADPGSWLRDFSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN
ASAALAVAVFEALRQRGVRR
>Mature_259_residues
TETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAARLAAVADCRQAKTVVVPD
ALFAELAPVATPTGVLAEAAWLTPQAPVDLALVVVLEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQG
AQFVLPMQLAADPGSWLRDFSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLNA
SAALAVAVFEALRQRGVRR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=296, Percent_Identity=27.027027027027, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI1790623, Length=153, Percent_Identity=35.2941176470588, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790083, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666840, Length=291, Percent_Identity=25.7731958762887, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27021; Mature: 26890

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESC
CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCEEEEECCC
DAARLAAVADCRQAKTVVVPDALFAELAPVATPTGVLAEAAWLTPQAPVDLALVVVLEDI
CHHHHHHHHHHHHCCEEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
QDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLPMQLAADPGSWLRD
CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHCCCCCCEEEEEEEECCCCHHHHHH
FSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN
CCCCEEEECCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
ASAALAVAVFEALRQRGVRR
CHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESC
CCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCEEEEECCC
DAARLAAVADCRQAKTVVVPDALFAELAPVATPTGVLAEAAWLTPQAPVDLALVVVLEDI
CHHHHHHHHHHHHCCEEEECHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
QDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLPMQLAADPGSWLRD
CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHCCCCCCEEEEEEEECCCCHHHHHH
FSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN
CCCCEEEECCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
ASAALAVAVFEALRQRGVRR
CHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]