| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hflX [H]
Identifier: 74316620
GI number: 74316620
Start: 630362
End: 631531
Strand: Direct
Name: hflX [H]
Synonym: Tbd_0602
Alternate gene names: 74316620
Gene position: 630362-631531 (Clockwise)
Preceding gene: 74316619
Following gene: 74316621
Centisome position: 21.66
GC content: 66.15
Gene sequence:
>1170_bases TTGTTTGATCGACACCAGGGTGGGGAGCGCGTCGTTCTCGCCGCGCTCGACCTGGGTGACCCCGATTTCGCCGAGAGCAT GGCCGAACTGCGGCTGCTGGCGCGCGGCGCGGGCCTCGACATTCGCGGGGAAGTCCAGGGCAGACGCAGCCGCCCCGACG CGGCTCTCTTCGTCGGGAGTGGTAAGGCCGACGAAATTGCGGCGCTGGTCGCCGCGACCGATGCCGAAGTCGTGATCTTC AACCACGAACTCTCACCGGCGCAGGAACGCAACCTAGAACGCCGGCTGCATTGCCGCGTCATCGACCGGGTCAGCCTGAT TCTCGATATCTTCGCGCGGCGCGCACGCAGCGCTGAGGGCAAGCTGCAGGTCGAACTGGCCCAGTTGCAGCATCTGTCGA CGCGTCTCGTGCGCGGCTGGACCCACCTCGAACGCCAGCGCGGCGGCGTCGGGATGCGCGGACCCGGCGAAAAGCAATTG GAGACCGACCGCCGCCTGATCGGAATCCGCGTCAAGGCCTTGCGCGAACGGCTCGCCAAACTCGGCAAGCAGCGGCGGAC CCAGCGTCGGTCGCGCAGTCGCCACCGCGTGCTGTCGGTCGCGCTGGTCGGCTATACCAATGCTGGCAAATCCACGCTGT TCAACGCCTTGACGCGCGCCGGCACCTACGCTGCCGACCAGCTGTTCGCCACGCTCGACACCACGACGCGGAAGATTTTC CTCCCGCGCCTGGCCGATGCCGACGAGCCGGGGAGCGGAGAAGTCGTGCTGTCCGATACCGTGGGCTTCATCACCCGTCT GCCGCACGATCTCGTCGCGGCCTTTCGCGCGACCCTCGAAGCGACGGCCGAAGCCGACCTTCTGCTGCACGTGATCGATG CCTCGAGTCCGGTCCGCGAGCGCCAGATCGAGGCGGTCGATCAGGTGTTGCGCGAGATCGGCGCCGACGCCGTGCCACAG CTCAGGGTCTACAACAAACTCGATCTGACGGCCGCCGCGCCGGGCGTCGGGCGCGATGAGTATGATAGACTGCAGAGCGT TTATGTGTCCGCGCAAACCGGCGCCGGGCTTGAACTTTTACGCGATGCCCTGTCAGAAACGCTGCTCGCGGCACGCGAAA CGGGTGCATCGGAAACGCCTTCTTCCCCATCCACAGTTCACTCTGCATAA
Upstream 100 bases:
>100_bases GTCGGTGCACCGGGCTCGAACGTCCCGTCCGACGCCTTCGGGAGGCCAGCGGGTGATGCCCGCTCGCGGATGAAGCAGCC GCGGAGGCGGGGAATCAGCG
Downstream 100 bases:
>100_bases CAACATATGGCCTGGAACGACCCGCAATGGGGCAACAAGGGCAACCGCAACAACAGCGGTCCGCCCGATCTGGACGAGCT TTGGCGGCGCCTGAACCAGC
Product: GTP-binding protein HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MFDRHQGGERVVLAALDLGDPDFAESMAELRLLARGAGLDIRGEVQGRRSRPDAALFVGSGKADEIAALVAATDAEVVIF NHELSPAQERNLERRLHCRVIDRVSLILDIFARRARSAEGKLQVELAQLQHLSTRLVRGWTHLERQRGGVGMRGPGEKQL ETDRRLIGIRVKALRERLAKLGKQRRTQRRSRSRHRVLSVALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIF LPRLADADEPGSGEVVLSDTVGFITRLPHDLVAAFRATLEATAEADLLLHVIDASSPVRERQIEAVDQVLREIGADAVPQ LRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELLRDALSETLLAARETGASETPSSPSTVHSA
Sequences:
>Translated_389_residues MFDRHQGGERVVLAALDLGDPDFAESMAELRLLARGAGLDIRGEVQGRRSRPDAALFVGSGKADEIAALVAATDAEVVIF NHELSPAQERNLERRLHCRVIDRVSLILDIFARRARSAEGKLQVELAQLQHLSTRLVRGWTHLERQRGGVGMRGPGEKQL ETDRRLIGIRVKALRERLAKLGKQRRTQRRSRSRHRVLSVALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIF LPRLADADEPGSGEVVLSDTVGFITRLPHDLVAAFRATLEATAEADLLLHVIDASSPVRERQIEAVDQVLREIGADAVPQ LRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELLRDALSETLLAARETGASETPSSPSTVHSA >Mature_389_residues MFDRHQGGERVVLAALDLGDPDFAESMAELRLLARGAGLDIRGEVQGRRSRPDAALFVGSGKADEIAALVAATDAEVVIF NHELSPAQERNLERRLHCRVIDRVSLILDIFARRARSAEGKLQVELAQLQHLSTRLVRGWTHLERQRGGVGMRGPGEKQL ETDRRLIGIRVKALRERLAKLGKQRRTQRRSRSRHRVLSVALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIF LPRLADADEPGSGEVVLSDTVGFITRLPHDLVAAFRATLEATAEADLLLHVIDASSPVRERQIEAVDQVLREIGADAVPQ LRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELLRDALSETLLAARETGASETPSSPSTVHSA
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=242, Percent_Identity=37.603305785124, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI310133116, Length=240, Percent_Identity=37.9166666666667, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI310124269, Length=223, Percent_Identity=39.4618834080717, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI310124267, Length=223, Percent_Identity=39.4618834080717, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI310124171, Length=223, Percent_Identity=39.4618834080717, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI310124169, Length=223, Percent_Identity=39.4618834080717, Blast_Score=117, Evalue=1e-26, Organism=Escherichia coli, GI1790615, Length=369, Percent_Identity=56.639566395664, Blast_Score=382, Evalue=1e-107, Organism=Caenorhabditis elegans, GI17561038, Length=291, Percent_Identity=31.2714776632302, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24650079, Length=331, Percent_Identity=33.5347432024169, Blast_Score=125, Evalue=5e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 42521; Mature: 42521
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDRHQGGERVVLAALDLGDPDFAESMAELRLLARGAGLDIRGEVQGRRSRPDAALFVGS CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEC GKADEIAALVAATDAEVVIFNHELSPAQERNLERRLHCRVIDRVSLILDIFARRARSAEG CCHHHHHHHEEECCCEEEEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KLQVELAQLQHLSTRLVRGWTHLERQRGGVGMRGPGEKQLETDRRLIGIRVKALRERLAK CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LGKQRRTQRRSRSRHRVLSVALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIF HHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEE LPRLADADEPGSGEVVLSDTVGFITRLPHDLVAAFRATLEATAEADLLLHVIDASSPVRE ECHHCCCCCCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHHHCCHHHEEEEECCCCCHHH RQIEAVDQVLREIGADAVPQLRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELL HHHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCCHHHHHHHHHHEECCCCCCHHHH RDALSETLLAARETGASETPSSPSTVHSA HHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MFDRHQGGERVVLAALDLGDPDFAESMAELRLLARGAGLDIRGEVQGRRSRPDAALFVGS CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEC GKADEIAALVAATDAEVVIFNHELSPAQERNLERRLHCRVIDRVSLILDIFARRARSAEG CCHHHHHHHEEECCCEEEEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KLQVELAQLQHLSTRLVRGWTHLERQRGGVGMRGPGEKQLETDRRLIGIRVKALRERLAK CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LGKQRRTQRRSRSRHRVLSVALVGYTNAGKSTLFNALTRAGTYAADQLFATLDTTTRKIF HHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEE LPRLADADEPGSGEVVLSDTVGFITRLPHDLVAAFRATLEATAEADLLLHVIDASSPVRE ECHHCCCCCCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHHHCCHHHEEEEECCCCCHHH RQIEAVDQVLREIGADAVPQLRVYNKLDLTAAAPGVGRDEYDRLQSVYVSAQTGAGLELL HHHHHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCCCHHHHHHHHHHEECCCCCCHHHH RDALSETLLAARETGASETPSSPSTVHSA HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]