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The map label for this gene is lptF [H]

Identifier: 74316599

GI number: 74316599

Start: 611175

End: 612254

Strand: Direct

Name: lptF [H]

Synonym: Tbd_0581

Alternate gene names: 74316599

Gene position: 611175-612254 (Clockwise)

Preceding gene: 74316594

Following gene: 74316600

Centisome position: 21.0

GC content: 64.26

Gene sequence:

>1080_bases
ATGCTCTATCGCCGCGCACTGACCCGTGAAATGGGCCTCGCGACCGGCGCCGTGTTAACGGTGCTGATCGCGATCGCTCT
CGTCATCCTGTTCATCCGGCTGCTCGGCGACGTCGCCCGCGGAGAGCTCGCGAACGAAGCCGTCTTCGCGTTTCTCGGCT
TTTCGCTGCTGTACTTTTTGCCGGTCTTGATGACGATTTCTCTGTTTGCGGGCGTGCTGATGCCGCTTTCGCGCATGTGG
CGGGACAGCGAAATGGTCATATGGTTCAACGCGGGGCTCTCGCTCGCGCAATGGCTGCGGCCGGTACTTGCGTTTGCAGT
CCCGCTTTCGCTCGTGATCCTGTTGCTGACGCTCGTTCTCAATCCCTGGTTGCAGGCGAAGAAAAACGACTATCGCCAGG
ATCTGAAGGCACGCAGCGAGAGCGCACTGATCGCGCCAGGCCTGTTCGCCGAATCCGGCGCCGGAGAACGCGTCTACTAC
GTCGAATCGCTCAATCCGCTGACTGGCATCGTGCGCAACGTTTTCATGCAATCGCGGATCGACGGACAGCTTGGCCTCGT
CGTTGCCCGCGAGGGCGACCATACCGAGTTGCCCGACGGCTCGCGCTACCTCGTGTTCAGGCAAGGCCGCCGCTATGAAG
GCACGCCCGGTACGCTCGACTACCGGGTCGTGGAGTTCGAGCGCTACTGGATGCGGCTCGATCCGGTCGCCACGGGCGGC
CGGGATACCAACATCCGCCAGAAGTCCGCCGGCGACCTCCTCGCCGATCCCGCGCCGGCGGCGCGTGCCGAACTCCTTTG
GCGCCTCGGCGTGCCGCTGTCGGCGCTGGTGCTCGCGGTCATGGCGATCCCGCTCAGCTTTGTCAACACCCGGGCGCGTC
GTTCCTATGGGCTCGTGACGGCGCTGCTGCTGTACTTCGTCTACAACAACCTGCTGTCGCTGACCCAGGCCTGGGTCGCG
CAGGGCAGATTCGACCCCTGGGCCGGAATGGCGTCGGCCCACCTCGTGATGCTGCTCGCTGCGGCCGGCCTCTTCTATCT
TCGCAGCCGTCGCTACGGCTTCAGCTGGAGAAGGACGTGA

Upstream 100 bases:

>100_bases
ATGCGCCGGCTGCCGGCCGCGCCAATGGAGGAATTATTGGCGTTGTCGCAGGGGAATGTCAAAAGCGCGTTCGTGCCATG
TCCGCCGTTTTCCCGCACCC

Downstream 100 bases:

>100_bases
ACCTGCTCGCGCGCTATCTCGCGGGCCAGGTGCTGGCCGCCTCGGGTTTCATGCTGCTGGCCCTGCTCGTGCTGTTCGCG
TTTTTCGACGTCGTCCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFLPVLMTISLFAGVLMPLSRMW
RDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLNPWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYY
VESLNPLTGIVRNVFMQSRIDGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG
RDTNIRQKSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTRARRSYGLVTALLLYFVYNNLLSLTQAWVA
QGRFDPWAGMASAHLVMLLAAAGLFYLRSRRYGFSWRRT

Sequences:

>Translated_359_residues
MLYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFLPVLMTISLFAGVLMPLSRMW
RDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLNPWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYY
VESLNPLTGIVRNVFMQSRIDGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG
RDTNIRQKSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTRARRSYGLVTALLLYFVYNNLLSLTQAWVA
QGRFDPWAGMASAHLVMLLAAAGLFYLRSRRYGFSWRRT
>Mature_359_residues
MLYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFLPVLMTISLFAGVLMPLSRMW
RDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLNPWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYY
VESLNPLTGIVRNVFMQSRIDGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG
RDTNIRQKSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTRARRSYGLVTALLLYFVYNNLLSLTQAWVA
QGRFDPWAGMASAHLVMLLAAAGLFYLRSRRYGFSWRRT

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=341, Percent_Identity=28.4457478005865, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40137; Mature: 40137

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLMTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYYVESLNPLTGIVRNVFMQSRI
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
DGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCC
RDTNIRQKSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTRARRSYGLVT
CCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGLFYLRSRRYGFSWRRT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVLMTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYYVESLNPLTGIVRNVFMQSRI
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
DGQLGLVVAREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG
CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCC
RDTNIRQKSAGDLLADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNTRARRSYGLVT
CCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGLFYLRSRRYGFSWRRT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]