| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316594
Identifier: 74316594
GI number: 74316594
Start: 604484
End: 605686
Strand: Direct
Name: 74316594
Synonym: Tbd_0576
Alternate gene names: NA
Gene position: 604484-605686 (Clockwise)
Preceding gene: 74316593
Following gene: 74316599
Centisome position: 20.77
GC content: 58.1
Gene sequence:
>1203_bases ATGAAATTCACACGCGTATTCGCATTCATGGCGCTGGCTGGTCTGGCCGGCAGCGCCTTCGCTACCAATGGCTACTTCTC GCACGGCTACGGCATGAAGGCCAAGGGCATGGCCGGCGCCGCCACCACCAACACCGACGACGCCTTCGGCGGTGCCAACA ACCCCGCTGCGATGGCTTTCGCAGGTAACCGTCTCGATCTGGGCGTGGACCTGTTCAGCCCGCGCCGCGAAGCAAGCATG AGCGTTCCCGGCGTGTCGGTTAAGAGCGACTCCAACTACTTCCTGATCCCGGAATTCGGCTACACGCACCAGATGAGCAA CGATCTGGCGCTGGGCGTGACCGTGGTGGGTAACGGTGGCATGAACACCAATTACCCGACCAACCTGTATGGTGGTAACG GGAAACTCGGTATCGATCTGATGCAGTTGATTGTCGCTCCGACCGTTGCCTACAAGGTTGCGCCGAATCACTCCATCGGT ATTTCCCCGCTGCTGGGCTATCAGCGTTTCAAGGCTGAGGGCTTGGTTAACCCAAATACCGGAACCCCCATCCCCAACGC AGGATACGACGATTCTTTCGGCTACGGCGTGCGTGTCGGGTACCTGGGTAAGATCACACCGACGGTTACAATTGGTGCGG CTTATGCCAGCAAGATGAATTTCGACGAGTTTAGCAAGTACAACTGGTTGTTCCTGGAAAACGGCGACTTCGACATTCCC GAGAACTACAACCTTGGCGCGTCGTGGCAGGCGACTTCTGCGCTCAGGCTGGCGCTGGACTATCAGCGCATCAATTACTC GGGCGTAAAGGCAGTTGGTGCAGCGCCTTCGGCTGGTGGCTTCGGCTACGATGACGTCAATGTCGTGAAGCTTGGTGCCG AGTACAAGCTCAACTCGGCATGGACCCTGCGCGCAGGCTACAGCCATACCAACAACCCGATCAAGGGTGCAACCGCTACC GAGTGCGGTGCGGGTTCTGTGAACTGCGGCGAGGTGACCACCAATATCCTGGCTCCTGCCGTGATCAAAGATCACGCCAC GCTGGGCTTCACCTACACGCTGGCTTCCGGCAACGAACTGACCATGGCTTACATGCATGCCTTCGAGAACGACGTATCCG GCTATAACGGCAACAGCGGCGGCACTGATACCATCCGCATGTACCAGGATTCGCTGGGCGTCCAGTACAGCTGGAAGATG TAA
Upstream 100 bases:
>100_bases TGGGGTGGCTGGCTTGTCTAAGCGCTAGAGCACGCGTAGCCTTCCGGGTAGGTCATACAACAAGTTGATCTGTAGTAATT CCGCCCATAAGGAGACATCA
Downstream 100 bases:
>100_bases TTACCACCAGCTTTGCGCTGTCTGAAAGCCGGGGTCGTGAGACCCCGGCTTTTTTTAGCTTTATTGACCCGGTTCGTTGT AAAAACGCGGCTTCTGCCAC
Product: putative long-chain fatty acid transport protein
Products: NA
Alternate protein names: Aromatic Hydrocarbon Degradation Membrane Protein; Transporter Protein; Fatty Acid And Hydrocarbon Transporter; Fatty Acid/Hydrocarbon Transporter; Long-Chain Fatty Acid ABC Transporter
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MKFTRVFAFMALAGLAGSAFATNGYFSHGYGMKAKGMAGAATTNTDDAFGGANNPAAMAFAGNRLDLGVDLFSPRREASM SVPGVSVKSDSNYFLIPEFGYTHQMSNDLALGVTVVGNGGMNTNYPTNLYGGNGKLGIDLMQLIVAPTVAYKVAPNHSIG ISPLLGYQRFKAEGLVNPNTGTPIPNAGYDDSFGYGVRVGYLGKITPTVTIGAAYASKMNFDEFSKYNWLFLENGDFDIP ENYNLGASWQATSALRLALDYQRINYSGVKAVGAAPSAGGFGYDDVNVVKLGAEYKLNSAWTLRAGYSHTNNPIKGATAT ECGAGSVNCGEVTTNILAPAVIKDHATLGFTYTLASGNELTMAYMHAFENDVSGYNGNSGGTDTIRMYQDSLGVQYSWKM
Sequences:
>Translated_400_residues MKFTRVFAFMALAGLAGSAFATNGYFSHGYGMKAKGMAGAATTNTDDAFGGANNPAAMAFAGNRLDLGVDLFSPRREASM SVPGVSVKSDSNYFLIPEFGYTHQMSNDLALGVTVVGNGGMNTNYPTNLYGGNGKLGIDLMQLIVAPTVAYKVAPNHSIG ISPLLGYQRFKAEGLVNPNTGTPIPNAGYDDSFGYGVRVGYLGKITPTVTIGAAYASKMNFDEFSKYNWLFLENGDFDIP ENYNLGASWQATSALRLALDYQRINYSGVKAVGAAPSAGGFGYDDVNVVKLGAEYKLNSAWTLRAGYSHTNNPIKGATAT ECGAGSVNCGEVTTNILAPAVIKDHATLGFTYTLASGNELTMAYMHAFENDVSGYNGNSGGTDTIRMYQDSLGVQYSWKM >Mature_400_residues MKFTRVFAFMALAGLAGSAFATNGYFSHGYGMKAKGMAGAATTNTDDAFGGANNPAAMAFAGNRLDLGVDLFSPRREASM SVPGVSVKSDSNYFLIPEFGYTHQMSNDLALGVTVVGNGGMNTNYPTNLYGGNGKLGIDLMQLIVAPTVAYKVAPNHSIG ISPLLGYQRFKAEGLVNPNTGTPIPNAGYDDSFGYGVRVGYLGKITPTVTIGAAYASKMNFDEFSKYNWLFLENGDFDIP ENYNLGASWQATSALRLALDYQRINYSGVKAVGAAPSAGGFGYDDVNVVKLGAEYKLNSAWTLRAGYSHTNNPIKGATAT ECGAGSVNCGEVTTNILAPAVIKDHATLGFTYTLASGNELTMAYMHAFENDVSGYNGNSGGTDTIRMYQDSLGVQYSWKM
Specific function: Unknown
COG id: COG2067
COG function: function code I; Long-chain fatty acid transport protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42395; Mature: 42395
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFTRVFAFMALAGLAGSAFATNGYFSHGYGMKAKGMAGAATTNTDDAFGGANNPAAMAF CCHHHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE AGNRLDLGVDLFSPRREASMSVPGVSVKSDSNYFLIPEFGYTHQMSNDLALGVTVVGNGG ECCEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEEEEEECCC MNTNYPTNLYGGNGKLGIDLMQLIVAPTVAYKVAPNHSIGISPLLGYQRFKAEGLVNPNT CCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCHHHHHCCCCCCCC GTPIPNAGYDDSFGYGVRVGYLGKITPTVTIGAAYASKMNFDEFSKYNWLFLENGDFDIP CCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEHHHHCCCHHHHCCEEEEEEECCCCCCC ENYNLGASWQATSALRLALDYQRINYSGVKAVGAAPSAGGFGYDDVNVVKLGAEYKLNSA CCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCE WTLRAGYSHTNNPIKGATATECGAGSVNCGEVTTNILAPAVIKDHATLGFTYTLASGNEL EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCEEEEEEEECCCCEE TMAYMHAFENDVSGYNGNSGGTDTIRMYQDSLGVQYSWKM EEHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCEEEEECC >Mature Secondary Structure MKFTRVFAFMALAGLAGSAFATNGYFSHGYGMKAKGMAGAATTNTDDAFGGANNPAAMAF CCHHHHHHHHHHHHCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE AGNRLDLGVDLFSPRREASMSVPGVSVKSDSNYFLIPEFGYTHQMSNDLALGVTVVGNGG ECCEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEEEEEECCC MNTNYPTNLYGGNGKLGIDLMQLIVAPTVAYKVAPNHSIGISPLLGYQRFKAEGLVNPNT CCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCHHHHHCCCCCCCC GTPIPNAGYDDSFGYGVRVGYLGKITPTVTIGAAYASKMNFDEFSKYNWLFLENGDFDIP CCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEHHHHCCCHHHHCCEEEEEEECCCCCCC ENYNLGASWQATSALRLALDYQRINYSGVKAVGAAPSAGGFGYDDVNVVKLGAEYKLNSA CCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCEEECCE WTLRAGYSHTNNPIKGATATECGAGSVNCGEVTTNILAPAVIKDHATLGFTYTLASGNEL EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCEEEEEEEECCCCEE TMAYMHAFENDVSGYNGNSGGTDTIRMYQDSLGVQYSWKM EEHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA