| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is pepA [H]
Identifier: 74316598
GI number: 74316598
Start: 609534
End: 611045
Strand: Reverse
Name: pepA [H]
Synonym: Tbd_0580
Alternate gene names: 74316598
Gene position: 611045-609534 (Counterclockwise)
Preceding gene: 74316602
Following gene: 74316597
Centisome position: 21.0
GC content: 65.48
Gene sequence:
>1512_bases ATGGAAAACAGGGAAATCGAACTCGAATTTAGCATAAAAAGCGGTGCGCCCGAAAAGCAGCGCACGGCCTGCGTCGTCGT CGGCGTCTTCGAAAGCCGCAAACTTTCGGCACCGGCGATCGACATCGATCGGGCGAGCGACGGCTATCTGTCGGACATCG TGCGCGGCGGCGACATGGACGGCAAGGCCGGCAGCACGCTGCTGCTGCACCGGGTGCCGAACATCCTGGCCGACCGCGTG CTGCTTGTTGGCCTCGGCAAGGAGCGGGAGTTCCACGAGAAATCGTACCGCGACGCGATCGCCCGCGCGATCCGCACCCT GCGCGACACCGGGTCGATGGAAGCCGTCATCACCCTGAGCGAAATCGCGGTCCGTAAGCGTGACGTCACCTGGAATATCG AACAGGCGGTCATCAGTGCCCAGGAAGCCCTGTACCGCTTCGACCGCATGAAGAGCAAGACCGACGAAATGCGGCGCCCG CTCAAGCGCGTCGTCTTCGCGGTGTCGCGGCGCGGCGAACTGAAGTTCGGCGAAGCGGGCCTGACGCGAGGCCTGGCGAT CGCACGCGGCATCGCGCTGGCCAAGGACCTCGGCAACACGCCATCGAATGTCTGCACGCCCGAGTATCTGGCGGCGGAAG CGCGCAAGCTCGCGAAGACCCACGGCTTCGGCTGCGAGATTCTCGATTTCGCGGCATGCGAGAAGCTCGGCATGGGCTCC TTTCTCTCGGTCGGCAAGGGCAGCGACAAGCCGCCGCGCTTCATCGTGCTGAAACACATGGGGGGAGCCAAGGGTGACAA GCCCGTGGTCCTGGTCGGCAAGGCCGTCACCTTCGACGCCGGCGGGATTTCGCTGAAGCCGCCTGCCGAAATGGACGAGA TGAACTACGACATGAGCGGCGGCGGCGCGGTCATCGGCACCTTCCGCGCGATCGGCGAACTCGGCCTGCCGCTCAACGTC GTCGGCCTGATCCCGGCCTGCGAGAACCTGCCCGACGCCCAAGCCAACAAGCCGGGGGACATCGTCACGTCGATGTCGGG TCAGACGATCGAGATCCTCAACACCGACGCCGAGGGGCGCCTGATTCTGTGCGACGCCCTGACCTACGCCGAGCGCTTCG AGCCCGACGCGGTCATCGACGTCGCCACGCTGACCGGCGCCTGTGTGATCGCCCTCGGCGCCCATCCGAGCGCGCTTTAC AGCAACCACGACCCGCTCGCCCGCGAGATCGAGCACGCCGCCGATCACGCCTGGGACCGCGTGTGGCGCATGCCCCTGTG GGACGACTACCAGGATCAGCTGAAGAGCAGCCTTGCCGACGTCGCGAACATCGGCGGCCGTCCCGGCGGTTCGATCACCG CCGCCTGCTTCCTGTCGCGCTTCGCCAAGAAATACCATTGGGCCCACCTCGACATCGCCGGCACGGCATACAAGGGTGGT CGCGAAAAGGGCTCGACCGGCCGTCCGGTCTCCTTGCTCGTGCATTTCCTGTTGAATCGCACGGAAAAGTGA
Upstream 100 bases:
>100_bases AACGCGCTTTTGACATTCCCCTGCGACAACGCCAATAATTCCTCCATTGGCGCGGCCGGCAGCCGGCGCATCGACAAATT GTATTTTTTTGAGCACAGAC
Downstream 100 bases:
>100_bases CCGAGATCATCTTCTATACCTTTGCCGAAGACCGCCTCGACGTCGCGCGCCGCGTGGCGGCCAAGGCCTACGGTCAAGGC AAGCAGGTGATGATCTATGC
Product: leucyl aminopeptidase
Products: NA
Alternate protein names: Leucine aminopeptidase; LAP; Leucyl aminopeptidase [H]
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MENREIELEFSIKSGAPEKQRTACVVVGVFESRKLSAPAIDIDRASDGYLSDIVRGGDMDGKAGSTLLLHRVPNILADRV LLVGLGKEREFHEKSYRDAIARAIRTLRDTGSMEAVITLSEIAVRKRDVTWNIEQAVISAQEALYRFDRMKSKTDEMRRP LKRVVFAVSRRGELKFGEAGLTRGLAIARGIALAKDLGNTPSNVCTPEYLAAEARKLAKTHGFGCEILDFAACEKLGMGS FLSVGKGSDKPPRFIVLKHMGGAKGDKPVVLVGKAVTFDAGGISLKPPAEMDEMNYDMSGGGAVIGTFRAIGELGLPLNV VGLIPACENLPDAQANKPGDIVTSMSGQTIEILNTDAEGRLILCDALTYAERFEPDAVIDVATLTGACVIALGAHPSALY SNHDPLAREIEHAADHAWDRVWRMPLWDDYQDQLKSSLADVANIGGRPGGSITAACFLSRFAKKYHWAHLDIAGTAYKGG REKGSTGRPVSLLVHFLLNRTEK
Sequences:
>Translated_503_residues MENREIELEFSIKSGAPEKQRTACVVVGVFESRKLSAPAIDIDRASDGYLSDIVRGGDMDGKAGSTLLLHRVPNILADRV LLVGLGKEREFHEKSYRDAIARAIRTLRDTGSMEAVITLSEIAVRKRDVTWNIEQAVISAQEALYRFDRMKSKTDEMRRP LKRVVFAVSRRGELKFGEAGLTRGLAIARGIALAKDLGNTPSNVCTPEYLAAEARKLAKTHGFGCEILDFAACEKLGMGS FLSVGKGSDKPPRFIVLKHMGGAKGDKPVVLVGKAVTFDAGGISLKPPAEMDEMNYDMSGGGAVIGTFRAIGELGLPLNV VGLIPACENLPDAQANKPGDIVTSMSGQTIEILNTDAEGRLILCDALTYAERFEPDAVIDVATLTGACVIALGAHPSALY SNHDPLAREIEHAADHAWDRVWRMPLWDDYQDQLKSSLADVANIGGRPGGSITAACFLSRFAKKYHWAHLDIAGTAYKGG REKGSTGRPVSLLVHFLLNRTEK >Mature_503_residues MENREIELEFSIKSGAPEKQRTACVVVGVFESRKLSAPAIDIDRASDGYLSDIVRGGDMDGKAGSTLLLHRVPNILADRV LLVGLGKEREFHEKSYRDAIARAIRTLRDTGSMEAVITLSEIAVRKRDVTWNIEQAVISAQEALYRFDRMKSKTDEMRRP LKRVVFAVSRRGELKFGEAGLTRGLAIARGIALAKDLGNTPSNVCTPEYLAAEARKLAKTHGFGCEILDFAACEKLGMGS FLSVGKGSDKPPRFIVLKHMGGAKGDKPVVLVGKAVTFDAGGISLKPPAEMDEMNYDMSGGGAVIGTFRAIGELGLPLNV VGLIPACENLPDAQANKPGDIVTSMSGQTIEILNTDAEGRLILCDALTYAERFEPDAVIDVATLTGACVIALGAHPSALY SNHDPLAREIEHAADHAWDRVWRMPLWDDYQDQLKSSLADVANIGGRPGGSITAACFLSRFAKKYHWAHLDIAGTAYKGG REKGSTGRPVSLLVHFLLNRTEK
Specific function: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides [H]
COG id: COG0260
COG function: function code E; Leucyl aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M17 family [H]
Homologues:
Organism=Homo sapiens, GI41393561, Length=505, Percent_Identity=36.4356435643564, Blast_Score=277, Evalue=1e-74, Organism=Homo sapiens, GI47155554, Length=417, Percent_Identity=29.9760191846523, Blast_Score=128, Evalue=1e-29, Organism=Escherichia coli, GI1790710, Length=496, Percent_Identity=57.258064516129, Blast_Score=595, Evalue=1e-171, Organism=Escherichia coli, GI87082123, Length=319, Percent_Identity=36.0501567398119, Blast_Score=166, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17556903, Length=296, Percent_Identity=35.8108108108108, Blast_Score=146, Evalue=2e-35, Organism=Caenorhabditis elegans, GI17565172, Length=153, Percent_Identity=37.2549019607843, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24661038, Length=472, Percent_Identity=33.8983050847458, Blast_Score=229, Evalue=2e-60, Organism=Drosophila melanogaster, GI21355725, Length=325, Percent_Identity=37.8461538461538, Blast_Score=227, Evalue=2e-59, Organism=Drosophila melanogaster, GI20129969, Length=489, Percent_Identity=31.2883435582822, Blast_Score=217, Evalue=2e-56, Organism=Drosophila melanogaster, GI161077148, Length=517, Percent_Identity=30.5609284332689, Blast_Score=214, Evalue=7e-56, Organism=Drosophila melanogaster, GI20130057, Length=517, Percent_Identity=30.5609284332689, Blast_Score=214, Evalue=7e-56, Organism=Drosophila melanogaster, GI21355645, Length=493, Percent_Identity=30.0202839756592, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24662223, Length=493, Percent_Identity=30.0202839756592, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24662227, Length=502, Percent_Identity=30.0796812749004, Blast_Score=204, Evalue=2e-52, Organism=Drosophila melanogaster, GI19922386, Length=488, Percent_Identity=28.6885245901639, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI20129963, Length=501, Percent_Identity=28.3433133732535, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI21357381, Length=322, Percent_Identity=29.8136645962733, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI221379063, Length=322, Percent_Identity=29.8136645962733, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI221379062, Length=322, Percent_Identity=29.8136645962733, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI24646701, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24646703, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358201, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011356 - InterPro: IPR000819 - InterPro: IPR023042 - InterPro: IPR008283 [H]
Pfam domain/function: PF00883 Peptidase_M17; PF02789 Peptidase_M17_N [H]
EC number: =3.4.11.1; =3.4.11.10 [H]
Molecular weight: Translated: 54442; Mature: 54442
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00631 CYTOSOL_AP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENREIELEFSIKSGAPEKQRTACVVVGVFESRKLSAPAIDIDRASDGYLSDIVRGGDMD CCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCC GKAGSTLLLHRVPNILADRVLLVGLGKEREFHEKSYRDAIARAIRTLRDTGSMEAVITLS CCCCCEEHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH EIAVRKRDVTWNIEQAVISAQEALYRFDRMKSKTDEMRRPLKRVVFAVSRRGELKFGEAG HHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHH LTRGLAIARGIALAKDLGNTPSNVCTPEYLAAEARKLAKTHGFGCEILDFAACEKLGMGS HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC FLSVGKGSDKPPRFIVLKHMGGAKGDKPVVLVGKAVTFDAGGISLKPPAEMDEMNYDMSG CEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCCCC GGAVIGTFRAIGELGLPLNVVGLIPACENLPDAQANKPGDIVTSMSGQTIEILNTDAEGR CCEEEHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCC LILCDALTYAERFEPDAVIDVATLTGACVIALGAHPSALYSNHDPLAREIEHAADHAWDR EEEEEHHHHHHHCCCCCEEEHHHHCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH VWRMPLWDDYQDQLKSSLADVANIGGRPGGSITAACFLSRFAKKYHWAHLDIAGTAYKGG HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCC REKGSTGRPVSLLVHFLLNRTEK CCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MENREIELEFSIKSGAPEKQRTACVVVGVFESRKLSAPAIDIDRASDGYLSDIVRGGDMD CCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCC GKAGSTLLLHRVPNILADRVLLVGLGKEREFHEKSYRDAIARAIRTLRDTGSMEAVITLS CCCCCEEHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH EIAVRKRDVTWNIEQAVISAQEALYRFDRMKSKTDEMRRPLKRVVFAVSRRGELKFGEAG HHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHH LTRGLAIARGIALAKDLGNTPSNVCTPEYLAAEARKLAKTHGFGCEILDFAACEKLGMGS HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC FLSVGKGSDKPPRFIVLKHMGGAKGDKPVVLVGKAVTFDAGGISLKPPAEMDEMNYDMSG CEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCCCC GGAVIGTFRAIGELGLPLNVVGLIPACENLPDAQANKPGDIVTSMSGQTIEILNTDAEGR CCEEEHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCC LILCDALTYAERFEPDAVIDVATLTGACVIALGAHPSALYSNHDPLAREIEHAADHAWDR EEEEEHHHHHHHCCCCCEEEHHHHCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH VWRMPLWDDYQDQLKSSLADVANIGGRPGGSITAACFLSRFAKKYHWAHLDIAGTAYKGG HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCC REKGSTGRPVSLLVHFLLNRTEK CCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA