| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is alaS [H]
Identifier: 74316571
GI number: 74316571
Start: 581267
End: 583927
Strand: Reverse
Name: alaS [H]
Synonym: Tbd_0553
Alternate gene names: 74316571
Gene position: 583927-581267 (Counterclockwise)
Preceding gene: 74316572
Following gene: 74316570
Centisome position: 20.07
GC content: 66.74
Gene sequence:
>2661_bases ATGCCTTACTGTCCGCCGTTCACGCACGATGCCCCCCGAAACATGAAAAGCAGCGCCATTCGTCAGAGCTTCCTCGACTT CTTCGCCTCGAAGGGGCATACGGTCGTGCCGTCCAGTTCGCTGGTGCCGGGCAACGATCCGACGCTGCTGTTCACCAACG CCGGGATGGTGCAGTTCAAGGACGTGTTCACCGGCCAGGACACCCGCCCCTACAGCCGCGCCGTGTCGTCGCAGCGCTGC GTGCGCGCCGGCGGCAAGCACAACGACCTCGAGAACGTCGGCTACACCGCACGTCACCACACCTTCTTCGAGATGCTGGG CAACTTCAGCTTCGGCGACTATTTCAAGCAGGACGCGATCAAGTACGCCTGGGAATACCTCACCACCGTGCTGAAGCTGC CGAGCGAAAAACTCTGGGTCACGGTCTACGCGGAGGACGACGAGGCCTACGACATCTGGCACAACGACGTCGGCGTGCCG AAGGCGCGCATCGTCCGCATCGGCGACAACAAGGGTGCGCGCTACGCCTCCGACAATTTCTGGGCGATGGGCGACACCGG CCCCTGCGGCCCCTGCACCGAGATCTTCTACGACCACGGCCCCGACGTCGCTGGCGGCCCGCCCGGCTCGCCCGACGAGG ATGGCGACCGTTACATCGAGATCTGGAACAACGTGTTCATGCAGTTCAATCGCGACGAGGCCGGCACGATGCATCCGCTG CCCAAGCCCTCGGTCGACACCGGCATGGGCCTCGAACGCATCTCGGCGGTCATGCAGCACGTGCATTCGAACTACGAGAT CGACCTCTTCCAGGCACTGATCGCCGCCGCCGCGCGCGAGACCAACACCCACGATCTGGGCAACAACTCGCTCAAGGTCA TCGCCGACCACATCCGCGCGTGTTCCTTCCTGATCGTCGACGGCGTCATCCCCGGCAACGAGGGCCGCGGCTACGTGCTG CGCCGCATCATCCGCCGCGCGATCCGCCACGGCTATAAATTGGGCGCGCGTGCGGCCTTCTTCCACCGCATCGTGCCCGA CCTCGGGATCGCGATGGGCGAGGCGTATCCGGAACTCGTCAAGGCGCAGACGCGCGTGATGGACATCCTGCGGCAGGAAG AGGAGCGCTTCTTCGAGACCATCGAGCACGGCATGGGCATCCTCGAGTCCGAACTCAAGAAACTCGTCGCCGGCGGCGTG TTCGACGGCGAACTCGCGTTCAAGCTGCACGACACCTATGGATTTCCGCTCGACCTTACCGCCGACATCTGCCGCGAGGC CGGCGTTGCCGTCGACACCGCCGCCTTCGACGCCGCGATGGCGCGTCAGAAGGCGCAGGCCCGCGGCGCCGGCAAGTTCA AGCTCGGCGCCGGCCTAGACTACGCCGGCGAGGCGACGACCTTCCACGGCTACGACACCCTGGCCCGCGAAGCCAGCGTG CTCGCGCTCTACAAGGACGGCAGCGCGGTCGGCGAACTCAAGGAAGGCGACTCTGGAGTCGTCGTGCTCGACCACACCCC GTTCTATGCGGAATCGGGCGGCCAGGTCGGCGACCGCGGCACGCTGCAGAGCAAGCAAGGCGCCTTCGAAGTCGAGGACA CGCTGAAGATCCAGGCGCAGGTATTCGGCCATCACGGCGTGGTCAAGACGGGCTCGCTCGCGGTCGGCGATTCGGTTCTC GCCCGCGTCGACGAGACCGCGCGCGCGCGTACGATGCGCAACCACTCGGTCACCCACCTCATGCACAAGGCCCTGCGCGA GGTGCTCGGCGAACACGTGCAGCAGAAAGGCTCGCTCGTCGACAGCGAAAAAACCCGCTTCGACTTCGTACAGCCGAGCC CGATGACCGCGGCCCAGATCCGCGAGGTCGAGGCGCGCGTCAACGCCGAAATCCTCGTCAACACGCCGACCCAGGCGCGC GTAATGGGCATCGAAGATGCGCAGAAGACCGGCGCGATGATGCTCTTCGGAGAAAAGTACGGCGACGAGGTGCGCGTGCT CGACATCGGCAGCTCGCGCGAGCTGTGCGGGGGCACCCACGTCGCACGCACCGGCGACATCGGCCTCTTCAAGATCGTCT CCGAATCGGGTGTGGCCGCCGGCGTACGCCGCGTCGAGGCCATCACCGGCGACAACGCGCTCGCCTACCTGCAGGCCCGC GAACAGGAGATCCAGCAGGCGGCAGCGGCGCTGAAGGCGCATCCGGCCGAGCTCGGCGCGAAGCTCGCGCAGACGCTCGA CCACGTCCGCGCGCTCGAGAAGGACCTCGAGCGCCTGAAATCGAAGCTCGCCGCGAGCGCGGGCGACGAGCTCGTCGCCC AGGCGGCCGATATCAACGGTGTGAAGGTGCTCGCCGCACGGCTCGACGGCATCGACGCGAAGGGCTTGCGCGAGACGGCC GACAAGCTGCGCGACAAACTCAAATCGTGTGCGCTCGTGCTCGGCACGGTCGCCGACGGAAAGGTGAGCCTGATCGCCGC GGTGACGCCCGACGTTACGGCGAAGATCAAGGCGGGCGAACTCGTCAACGTCGTCGCGGCCCAGGTCGGCGGCAAGGGAG GCGGCAAACCCGATCTGGCGATGGCCGGGGGAACCGACCCCGGCGCGCTGCCCGCCGCACTCGCCTCCGTCGAGGCCTGG GTGCAAAGCCGGCTGAGCTGA
Upstream 100 bases:
>100_bases CACCGGCCGCGAACGACACCGACTCGGGCCGCGAGGAGCGGGCGCTTCGCCCTCGGCGGGCCGTGGTATCGCGTGTAAGT GCGGAACGTTAGCGGATACA
Downstream 100 bases:
>100_bases ACAAAGAGACTGGCACAAAGCTTGCTGGATAGACCGGTACCTTGATGTGGTCCCGACCGGATTTGCCTACCCATGAGCTC TTTGGCCACCAGATTTACCG
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MPYCPPFTHDAPRNMKSSAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSSQRC VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEKLWVTVYAEDDEAYDIWHNDVGVP KARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPL PKPSVDTGMGLERISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNNSLKVIADHIRACSFLIVDGVIPGNEGRGYVL RRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEERFFETIEHGMGILESELKKLVAGGV FDGELAFKLHDTYGFPLDLTADICREAGVAVDTAAFDAAMARQKAQARGAGKFKLGAGLDYAGEATTFHGYDTLAREASV LALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVL ARVDETARARTMRNHSVTHLMHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGSSRELCGGTHVARTGDIGLFKIVSESGVAAGVRRVEAITGDNALAYLQAR EQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETA DKLRDKLKSCALVLGTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQVGGKGGGKPDLAMAGGTDPGALPAALASVEAW VQSRLS
Sequences:
>Translated_886_residues MPYCPPFTHDAPRNMKSSAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSSQRC VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEKLWVTVYAEDDEAYDIWHNDVGVP KARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPL PKPSVDTGMGLERISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNNSLKVIADHIRACSFLIVDGVIPGNEGRGYVL RRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEERFFETIEHGMGILESELKKLVAGGV FDGELAFKLHDTYGFPLDLTADICREAGVAVDTAAFDAAMARQKAQARGAGKFKLGAGLDYAGEATTFHGYDTLAREASV LALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVL ARVDETARARTMRNHSVTHLMHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGSSRELCGGTHVARTGDIGLFKIVSESGVAAGVRRVEAITGDNALAYLQAR EQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETA DKLRDKLKSCALVLGTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQVGGKGGGKPDLAMAGGTDPGALPAALASVEAW VQSRLS >Mature_885_residues PYCPPFTHDAPRNMKSSAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSSQRCV RAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEKLWVTVYAEDDEAYDIWHNDVGVPK ARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLP KPSVDTGMGLERISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLR RIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEERFFETIEHGMGILESELKKLVAGGVF DGELAFKLHDTYGFPLDLTADICREAGVAVDTAAFDAAMARQKAQARGAGKFKLGAGLDYAGEATTFHGYDTLAREASVL ALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLA RVDETARARTMRNHSVTHLMHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARV MGIEDAQKTGAMMLFGEKYGDEVRVLDIGSSRELCGGTHVARTGDIGLFKIVSESGVAAGVRRVEAITGDNALAYLQARE QEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETAD KLRDKLKSCALVLGTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQVGGKGGGKPDLAMAGGTDPGALPAALASVEAWV QSRLS
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=974, Percent_Identity=37.4743326488706, Blast_Score=523, Evalue=1e-148, Organism=Homo sapiens, GI38569417, Length=942, Percent_Identity=35.3503184713376, Blast_Score=454, Evalue=1e-127, Organism=Escherichia coli, GI1789048, Length=879, Percent_Identity=61.0921501706485, Blast_Score=1064, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=36.8474923234391, Blast_Score=539, Evalue=1e-153, Organism=Caenorhabditis elegans, GI17536681, Length=742, Percent_Identity=34.2318059299191, Blast_Score=387, Evalue=1e-107, Organism=Saccharomyces cerevisiae, GI6324911, Length=963, Percent_Identity=36.3447559709242, Blast_Score=523, Evalue=1e-149, Organism=Drosophila melanogaster, GI24582809, Length=978, Percent_Identity=35.1738241308793, Blast_Score=531, Evalue=1e-150, Organism=Drosophila melanogaster, GI45552267, Length=978, Percent_Identity=35.1738241308793, Blast_Score=531, Evalue=1e-150, Organism=Drosophila melanogaster, GI24658214, Length=855, Percent_Identity=29.7076023391813, Blast_Score=334, Evalue=2e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 95647; Mature: 95516
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYCPPFTHDAPRNMKSSAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCEEEE DVFTGQDTRPYSRAVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAI HHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH KYAWEYLTTVLKLPSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNF HHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCE WAMGDTGPCGPCTEIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPL EECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCC PKPSVDTGMGLERISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNNSLKVIADHIRA CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH CSFLIVDGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELV HHHEEEECCCCCCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH KAQTRVMDILRQEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCH ADICREAGVAVDTAAFDAAMARQKAQARGAGKFKLGAGLDYAGEATTFHGYDTLAREASV HHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEECCHHHHHCCCEE LALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQSKQGAFEVEDTLKIQAQ EEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEECHHHEEEEE VFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHKALREVLGEHVQQKGSLV EECCCCCEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMGIEDAQKTGAMMLFGEKY CCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHCCCEEEEECCC GDEVRVLDIGSSRELCGGTHVARTGDIGLFKIVSESGVAAGVRRVEAITGDNALAYLQAR CCEEEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEHHHHH EQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLERLKSKLAASAGDELVAQAADING HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC VKVLAARLDGIDAKGLRETADKLRDKLKSCALVLGTVADGKVSLIAAVTPDVTAKIKAGE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEECCCH LVNVVAAQVGGKGGGKPDLAMAGGTDPGALPAALASVEAWVQSRLS HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PYCPPFTHDAPRNMKSSAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFK CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCEEEE DVFTGQDTRPYSRAVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAI HHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH KYAWEYLTTVLKLPSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNF HHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCE WAMGDTGPCGPCTEIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPL EECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCC PKPSVDTGMGLERISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNNSLKVIADHIRA CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH CSFLIVDGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELV HHHEEEECCCCCCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH KAQTRVMDILRQEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCH ADICREAGVAVDTAAFDAAMARQKAQARGAGKFKLGAGLDYAGEATTFHGYDTLAREASV HHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEECCHHHHHCCCEE LALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQSKQGAFEVEDTLKIQAQ EEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEECHHHEEEEE VFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHKALREVLGEHVQQKGSLV EECCCCCEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMGIEDAQKTGAMMLFGEKY CCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEECCHHHHCCCEEEEECCC GDEVRVLDIGSSRELCGGTHVARTGDIGLFKIVSESGVAAGVRRVEAITGDNALAYLQAR CCEEEEEECCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEHHHHH EQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLERLKSKLAASAGDELVAQAADING HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC VKVLAARLDGIDAKGLRETADKLRDKLKSCALVLGTVADGKVSLIAAVTPDVTAKIKAGE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEECCCH LVNVVAAQVGGKGGGKPDLAMAGGTDPGALPAALASVEAWVQSRLS HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA