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The map label for this gene is yjjV [H]

Identifier: 74316506

GI number: 74316506

Start: 507659

End: 508429

Strand: Reverse

Name: yjjV [H]

Synonym: Tbd_0488

Alternate gene names: 74316506

Gene position: 508429-507659 (Counterclockwise)

Preceding gene: 74316507

Following gene: 74316492

Centisome position: 17.47

GC content: 69.26

Gene sequence:

>771_bases
ATGCCCGATTTCTTCGATACCCACTGCCATCTCGACGCGGCCGAGTTCGACGCCGACCGCGACGCGATCCACGCGCGCGC
GTTTGCCGCCGGCGTCGTCGTGCAGGTCGTGCCGGCCGTCACCCGCGACAACTTCGCTGCGGTCGCGGCGACCTGCGCGC
GCTACCGCGGCTGCCTGCCCGCCTGGGGCCTGCATCCGATGCTCATCGGCGCGCACCGCCCCGAACATCTGAGCGACCTG
CGCGCACAGATCGAGATGCAGCGCCCGGTCGCGGTCGGCGAAATCGGGCTCGATCTGTTCGTGCGCGAGCTCGACTACGC
GACGCAGGAATATTTCTACGTCGAGCAGCTCAAGATCGCGCGCGACTACGACCTGCCCGTCTTGCTGCACGGCCGCCGCG
CGAGCGACCTGCTGCTCAAGCAGCTGCGCCGTATTCCTGTGCGCGGTATCGCCCACGCCTTCAACGGCAGCCGCCAGCAG
GCCGACGCATTCATCAAGCTGGGATTCAAGCTCGGCTTCGGCGGCGCCTTCACCTGGCCACGCGCCAACCAGCTGCGGCG
CCTCGCCGTCGAATTGCCGCTCGAGGCGATCGTGCTCGAGACCGACAGCCCCGACATCCCGCCGGCCTGGGTCGGGCGCG
GCAGGAACTCTCCAGGAGAACTGCCGGGGATCGCGCGCACGCTGGCCGAGTTACGCGGTGTGGATACCGAAACCGTCGCG
CGCGTCACGACGCAGAACGCGCGCGAGGTATTGGCGCTGGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
ATCTGCTCGGCTTCGCCAGCAACGACTAGGGTCAGCTGCTTCGGAAACAACGGCGTCCGTGTGGCGCCGTTGTTTTTTCA
GCCGCCAGACCCGGCGCCCG

Downstream 100 bases:

>100_bases
ACAGCTCAAAAAAGCCCTCAGCGGTCGAGGCCGGCGACGAGGCGGAGTTCGGCAGGAAAAGACGACAGGACGGTCTGGTT
CTTGCCCTTTTTTTTCGCGG

Product: putative TatD related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPDFFDTHCHLDAAEFDADRDAIHARAFAAGVVVQVVPAVTRDNFAAVAATCARYRGCLPAWGLHPMLIGAHRPEHLSDL
RAQIEMQRPVAVGEIGLDLFVRELDYATQEYFYVEQLKIARDYDLPVLLHGRRASDLLLKQLRRIPVRGIAHAFNGSRQQ
ADAFIKLGFKLGFGGAFTWPRANQLRRLAVELPLEAIVLETDSPDIPPAWVGRGRNSPGELPGIARTLAELRGVDTETVA
RVTTQNAREVLALAAA

Sequences:

>Translated_256_residues
MPDFFDTHCHLDAAEFDADRDAIHARAFAAGVVVQVVPAVTRDNFAAVAATCARYRGCLPAWGLHPMLIGAHRPEHLSDL
RAQIEMQRPVAVGEIGLDLFVRELDYATQEYFYVEQLKIARDYDLPVLLHGRRASDLLLKQLRRIPVRGIAHAFNGSRQQ
ADAFIKLGFKLGFGGAFTWPRANQLRRLAVELPLEAIVLETDSPDIPPAWVGRGRNSPGELPGIARTLAELRGVDTETVA
RVTTQNAREVLALAAA
>Mature_255_residues
PDFFDTHCHLDAAEFDADRDAIHARAFAAGVVVQVVPAVTRDNFAAVAATCARYRGCLPAWGLHPMLIGAHRPEHLSDLR
AQIEMQRPVAVGEIGLDLFVRELDYATQEYFYVEQLKIARDYDLPVLLHGRRASDLLLKQLRRIPVRGIAHAFNGSRQQA
DAFIKLGFKLGFGGAFTWPRANQLRRLAVELPLEAIVLETDSPDIPPAWVGRGRNSPGELPGIARTLAELRGVDTETVAR
VTTQNAREVLALAAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=258, Percent_Identity=31.3953488372093, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI110349734, Length=258, Percent_Identity=31.3953488372093, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI226061853, Length=265, Percent_Identity=30.9433962264151, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061614, Length=250, Percent_Identity=31.2, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=30.0884955752212, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI87082439, Length=249, Percent_Identity=41.7670682730924, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787342, Length=247, Percent_Identity=30.7692307692308, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=31.4393939393939, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=24.907063197026, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28234; Mature: 28102

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFFDTHCHLDAAEFDADRDAIHARAFAAGVVVQVVPAVTRDNFAAVAATCARYRGCLP
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
AWGLHPMLIGAHRPEHLSDLRAQIEMQRPVAVGEIGLDLFVRELDYATQEYFYVEQLKIA
CCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYDLPVLLHGRRASDLLLKQLRRIPVRGIAHAFNGSRQQADAFIKLGFKLGFGGAFTWP
CCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHEEEEEECCCCEECCC
RANQLRRLAVELPLEAIVLETDSPDIPPAWVGRGRNSPGELPGIARTLAELRGVDTETVA
CHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
RVTTQNAREVLALAAA
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDFFDTHCHLDAAEFDADRDAIHARAFAAGVVVQVVPAVTRDNFAAVAATCARYRGCLP
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
AWGLHPMLIGAHRPEHLSDLRAQIEMQRPVAVGEIGLDLFVRELDYATQEYFYVEQLKIA
CCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYDLPVLLHGRRASDLLLKQLRRIPVRGIAHAFNGSRQQADAFIKLGFKLGFGGAFTWP
CCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHEEEEEECCCCEECCC
RANQLRRLAVELPLEAIVLETDSPDIPPAWVGRGRNSPGELPGIARTLAELRGVDTETVA
CHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
RVTTQNAREVLALAAA
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]