| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316365
Identifier: 74316365
GI number: 74316365
Start: 365651
End: 366670
Strand: Direct
Name: 74316365
Synonym: Tbd_0347
Alternate gene names: NA
Gene position: 365651-366670 (Clockwise)
Preceding gene: 74316362
Following gene: 74316369
Centisome position: 12.57
GC content: 60.29
Gene sequence:
>1020_bases ATGCCGGGTTTTTCCGCCGATCTTGATTGCGTACCCGGAAGCATCCGGTCGCAGGTTGAGGAAAACTATCGGGTCTGGAG ACGCGCATGGATTACAAGCTCTGCGCAGCCTGCGGTCAACTCTTCAGGCCGCGCCCTCAGACTCCAACCCAGACATACTG CCCAGCGCAGGACTGCCAGCGAGAGCGGCGCCGACGCTGGCGGCGAGCTAAACGGCATCACGATCCCGACTACTGCGACA ACCAGGTATGCGGAGCGCCGGGGTATCAGCATCGTGCGTACCTATGCTGACGAGGGCAAGAGCGGTCTGCGCATCGATGG ACGCCGAGCGCTGCAGCAACTGATCAAGGATGTTGAAGGCGGGACGGCCGATTTCCAGATCATTTTGGTTTACGACGTCA GCCGCTGGGGTCGCTTCCAGGATGCCGACGAAAGCGCCTACTACGAGTGCATCTGCCGCCGCGCAGGCATACAGGTCGCT TATTGCGCCGAGCAGTTCGAGAATGACGGCTCTCCCGTGTCTACCATCGTCAAGGGCGTTAAGCGTGCCATGGCCCGCGA GTACAGCCGTGAGCTGTCCGCCAAGGTGTTTGCAGGCCAATGCCGCCTGATCGAACTCGGCTACCGCCAAGGCAGCCCAG CCGGCTTCGGTCTACGCCGGGTCCTCATCGATCAGCAAGGTTCGTCAAAGGGCATGCTAGCGCGTGGCGAACAGAAGAGC CTGCAGACCGATCGCGTCGTCTTGATGCCGGGGCCCGGGGACGAGATTCGCATCGTCCACCAGATCTATCGGTGGTTCAT CGATGAGGGGCTGGGCGACTCCGAGATCGCCATGCGCCTCAACAGCATACGGGTGCGCACCGATTTTGACCGGTACTGGA CGCGGGCCACGGTGCATGAGGTGCTGACCAACGAGAAATACATCGGGAACAACGTCTACAACCGCATTTCCTTCAAGCTC AAGAAACTCCGCGTGGTCAATACGCCTGACATGTGGGATCAAAAAGGAAGGCGCGTTTGA
Upstream 100 bases:
>100_bases AGTTAATAGGGCCGTTGATGCTGTAGCGTGTTAGGAACGCAGCGAGCCGAGACAGGTGTGGGGCGGCGGTACTTGATAAG GGCGCTAAAACGCGCTGGGG
Downstream 100 bases:
>100_bases GCCCGTCATGCCGGCGGACATTGTCTCTACGAGACGGTAACCCGGACTCTGTGCGAATGTGGCGCGGTGGGGGTGGGTTT TCTTCGAGCTTACGGCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Resolvase Domain-Containing Protein; Site-Specific Recombinase; Resolvase Family Site-Specific Recombinase; Resolvase Domain; Recombinase-Like Protein; Recombinase Protein; Site-Specific Recombinase Resolvase Family
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MPGFSADLDCVPGSIRSQVEENYRVWRRAWITSSAQPAVNSSGRALRLQPRHTAQRRTASESGADAGGELNGITIPTTAT TRYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEGGTADFQIILVYDVSRWGRFQDADESAYYECICRRAGIQVA YCAEQFENDGSPVSTIVKGVKRAMAREYSRELSAKVFAGQCRLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKS LQTDRVVLMPGPGDEIRIVHQIYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHEVLTNEKYIGNNVYNRISFKL KKLRVVNTPDMWDQKGRRV
Sequences:
>Translated_339_residues MPGFSADLDCVPGSIRSQVEENYRVWRRAWITSSAQPAVNSSGRALRLQPRHTAQRRTASESGADAGGELNGITIPTTAT TRYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEGGTADFQIILVYDVSRWGRFQDADESAYYECICRRAGIQVA YCAEQFENDGSPVSTIVKGVKRAMAREYSRELSAKVFAGQCRLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKS LQTDRVVLMPGPGDEIRIVHQIYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHEVLTNEKYIGNNVYNRISFKL KKLRVVNTPDMWDQKGRRV >Mature_338_residues PGFSADLDCVPGSIRSQVEENYRVWRRAWITSSAQPAVNSSGRALRLQPRHTAQRRTASESGADAGGELNGITIPTTATT RYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEGGTADFQIILVYDVSRWGRFQDADESAYYECICRRAGIQVAY CAEQFENDGSPVSTIVKGVKRAMAREYSRELSAKVFAGQCRLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKSL QTDRVVLMPGPGDEIRIVHQIYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHEVLTNEKYIGNNVYNRISFKLK KLRVVNTPDMWDQKGRRV
Specific function: Unknown
COG id: COG1961
COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38239; Mature: 38108
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGFSADLDCVPGSIRSQVEENYRVWRRAWITSSAQPAVNSSGRALRLQPRHTAQRRTAS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHCC ESGADAGGELNGITIPTTATTRYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEG CCCCCCCCCCCCEEECCCCHHHHHHHCCCEEEEEEHHCCCCCCEECHHHHHHHHHHHHCC GTADFQIILVYDVSRWGRFQDADESAYYECICRRAGIQVAYCAEQFENDGSPVSTIVKGV CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHHH KRAMAREYSRELSAKVFAGQCRLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKS HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCC LQTDRVVLMPGPGDEIRIVHQIYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHE CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECHHHHHHHHHHHH VLTNEKYIGNNVYNRISFKLKKLRVVNTPDMWDQKGRRV HHCCCCCCCCHHHHHHHHEEEEEEEECCCCHHCCCCCCC >Mature Secondary Structure PGFSADLDCVPGSIRSQVEENYRVWRRAWITSSAQPAVNSSGRALRLQPRHTAQRRTAS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHCC ESGADAGGELNGITIPTTATTRYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEG CCCCCCCCCCCCEEECCCCHHHHHHHCCCEEEEEEHHCCCCCCEECHHHHHHHHHHHHCC GTADFQIILVYDVSRWGRFQDADESAYYECICRRAGIQVAYCAEQFENDGSPVSTIVKGV CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHCCCCCHHHHHHHHH KRAMAREYSRELSAKVFAGQCRLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKS HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCC LQTDRVVLMPGPGDEIRIVHQIYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHE CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEEECHHHHHHHHHHHH VLTNEKYIGNNVYNRISFKLKKLRVVNTPDMWDQKGRRV HHCCCCCCCCHHHHHHHHEEEEEEEECCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA