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The map label for this gene is 74316355

Identifier: 74316355

GI number: 74316355

Start: 356619

End: 357212

Strand: Direct

Name: 74316355

Synonym: Tbd_0337

Alternate gene names: NA

Gene position: 356619-357212 (Clockwise)

Preceding gene: 74316354

Following gene: 74316356

Centisome position: 12.26

GC content: 65.32

Gene sequence:

>594_bases
GTGACGCACTGGCTGCGCTACGCCCTCGTGGCGGCGGTCGTGGTCGTCGCCGGTTGCCAGCCGAAGCCGCAGGCGCCCGC
GTTTCAGGCGACCGATATCACCGGCGCCGAGTTCGCGCGCGATTTCACGCTGACTGACCACAACGGGCAGGTGCGCAGCC
TCGGCGATTTTCGCGGGAAGGCCGTCGCGGTCTTCTTCGGCTACACGCATTGTCCGGACGTCTGCCCGACGACGCTCTCG
GATTTTGCCGCGGCGTTGTCGCAGCTCGGCCCGCAGGCGGAGCGCGTGCAGGTCATCTTCGTGACGGTCGATCCCCTGCG
CGATACGCCGGATCTGCTCAAGCAGTTCGTGCCGGCTTTCCATCCGAGCTTCCTCGGTATGTACGCCGACGGCCCCACGC
TCGAGCGCCTGGCGAAGGAATACAAGATCGTCTATCAGAAGACGGCGGAGAAGGCGGCCGACGACTATCTGATCGATCAC
AGTGCCGGCACCTACGTCTATGATCCGGCAGGCAAGCTCAGGCTGCTCGTCCCCTACGGCAGCAGCCCAGACGCGATCGC
CCAGGACCTGAAAACGCTTCTCAGCACGTCCTGA

Upstream 100 bases:

>100_bases
TGCTGCACGAGACGACGCTCGACAAGCTGGCGAAAGCCGTCGAGTCCGGGAAATACCGCCTCGCCGACGTTCCCGGCCTG
CTGTTCGAACAGGTCAAGGC

Downstream 100 bases:

>100_bases
AGGAGGCGGGCGCTTGTCGCGCCGGTCTCGTCTATCATATAATCCTTCGGTTTTAATATAAGCATATGCTGTTAAAGGAC
GCCGTGGAGTCGGCCGGCGT

Product: putative SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTHWLRYALVAAVVVVAGCQPKPQAPAFQATDITGAEFARDFTLTDHNGQVRSLGDFRGKAVAVFFGYTHCPDVCPTTLS
DFAAALSQLGPQAERVQVIFVTVDPLRDTPDLLKQFVPAFHPSFLGMYADGPTLERLAKEYKIVYQKTAEKAADDYLIDH
SAGTYVYDPAGKLRLLVPYGSSPDAIAQDLKTLLSTS

Sequences:

>Translated_197_residues
MTHWLRYALVAAVVVVAGCQPKPQAPAFQATDITGAEFARDFTLTDHNGQVRSLGDFRGKAVAVFFGYTHCPDVCPTTLS
DFAAALSQLGPQAERVQVIFVTVDPLRDTPDLLKQFVPAFHPSFLGMYADGPTLERLAKEYKIVYQKTAEKAADDYLIDH
SAGTYVYDPAGKLRLLVPYGSSPDAIAQDLKTLLSTS
>Mature_196_residues
THWLRYALVAAVVVVAGCQPKPQAPAFQATDITGAEFARDFTLTDHNGQVRSLGDFRGKAVAVFFGYTHCPDVCPTTLSD
FAAALSQLGPQAERVQVIFVTVDPLRDTPDLLKQFVPAFHPSFLGMYADGPTLERLAKEYKIVYQKTAEKAADDYLIDHS
AGTYVYDPAGKLRLLVPYGSSPDAIAQDLKTLLSTS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=133, Percent_Identity=37.593984962406, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI281182722, Length=133, Percent_Identity=37.593984962406, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI281182716, Length=133, Percent_Identity=37.593984962406, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI153791313, Length=133, Percent_Identity=37.593984962406, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI4759068, Length=134, Percent_Identity=28.3582089552239, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=142, Percent_Identity=23.943661971831, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=134, Percent_Identity=35.8208955223881, Blast_Score=106, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=134, Percent_Identity=33.5820895522388, Blast_Score=92, Evalue=7e-20,
Organism=Drosophila melanogaster, GI19920710, Length=134, Percent_Identity=34.3283582089552, Blast_Score=106, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21471; Mature: 21339

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHWLRYALVAAVVVVAGCQPKPQAPAFQATDITGAEFARDFTLTDHNGQVRSLGDFRGK
CCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCEEECCCCCEEECCCCCCC
AVAVFFGYTHCPDVCPTTLSDFAAALSQLGPQAERVQVIFVTVDPLRDTPDLLKQFVPAF
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
HPSFLGMYADGPTLERLAKEYKIVYQKTAEKAADDYLIDHSAGTYVYDPAGKLRLLVPYG
CHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEECCCCCEEEEEECC
SSPDAIAQDLKTLLSTS
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
THWLRYALVAAVVVVAGCQPKPQAPAFQATDITGAEFARDFTLTDHNGQVRSLGDFRGK
CHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHCCEEECCCCCEEECCCCCCC
AVAVFFGYTHCPDVCPTTLSDFAAALSQLGPQAERVQVIFVTVDPLRDTPDLLKQFVPAF
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
HPSFLGMYADGPTLERLAKEYKIVYQKTAEKAADDYLIDHSAGTYVYDPAGKLRLLVPYG
CHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEECCCCCEEEEEECC
SSPDAIAQDLKTLLSTS
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA