| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74316254
Identifier: 74316254
GI number: 74316254
Start: 259697
End: 260728
Strand: Reverse
Name: 74316254
Synonym: Tbd_0236
Alternate gene names: NA
Gene position: 260728-259697 (Counterclockwise)
Preceding gene: 74316255
Following gene: 74316252
Centisome position: 8.96
GC content: 69.57
Gene sequence:
>1032_bases ATGAGCGACCCGCTTGAATCGTGGCATGAAGAAAAGCGTTCGGCCTGGCTTTACCGGGTCGTCGCCGAATGCGAGCAGGG CACGCCGCGCGCGGCGCTGTTCGGTGAACTCGCGCAGGCCGCCGACGACCAGGCGGAAATCTGGTTGCGCGTCCTCGCTG CGGACGGCGCGCCGCCCCCCGCGCCCTTCCGCCCCGACCTGCGCACCCGCGTCGTCGCGTCCCTGACGCGTCTGTTCACG CCGCGTGCGATGCACGGTGTACTCGCCGCGATGAAGGTGCGCGGCATGAGTCTGTATACGCAGCACGCGCCGCACGCGAC ACCGTCCAAACGCGACGATATCGGCAAGCGCCACCGCACCGGCGCCGCCGGCAACGCCCTGCGTGCCGGCGTGTTCGGGG TCAACGACGGGCTGGTCTCCAACGCCGCGCTGATTTACGGCGTCGCCGGCGCCGCGCAGGCGTCCGAGGTCATTCTGCTG ACCGGCGTCGCCGGCCTGCTCGCCGGTGCGTTTTCGATGGCCGCCGGCGAATACGTGTCGATGCGCTCGCAGCGCGAGAT GTTCGAGTATCAAATCGGCCTCGAACGCGACGAACTGGAAAAGTATCCTGCCGAAGAAGCGGCCGAACTCGCGCTGATCT ATGCCGCCAAGGGCATGCCCGAAGGCGAGGCGAAGCGGGTCGCCGACACGCTGATGGAGAACCCGGAGCGCGCGCTCGAC ACGCTTGCGCGCGAGGAACTCGGCCTCAACCCCGACGAACTGGGCTCGCCGTGGACCGCGGCCTTGGCGTCGTTCGCCGC GTTCAGCGTTGGTGCCGCGGTACCCCTGCTCCCGTTCCTGCTCGGCGCCGGCAATTCGCTCGCGCTATCGGTCGCGTTCA CGGCGCTGGGGCTTTTCGCCGTCGGCGCGAGCATGAGCCTTTTCACCGGACGCCGCGCGCCGCTGAGCGGCTTGCGCATG CTCGCGATCGGCGGCGGCGCCGGGCTCGCGACGTATTTCATCGGCGCCTGGCTGGGGGTGACGCTGGGCTGA
Upstream 100 bases:
>100_bases ACCGCGTGCTCCGGCTCGCGCGCAGCGTCGCGGATCTCGCGGGCAGCGACGCGATCACCACGACCCACCTCGCCGAGGCG ATCCAATACCGGCGACAGGC
Downstream 100 bases:
>100_bases ATCGCCGGCGGCTGGCCGCGAACGCAGGCGACCAGCAAGCAGACGGGAGCAACGAGCAGAGGGAATTCGCGGTGACCGCG GCGCCTCAGGTCTGCTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Nodulin; Nodulin Protein; Iron And Manganese Transporter; Nodulin- Domain-Containing Protein; Ferritin-Like Domain Fused ; Mebrane Associated Protein DUF
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSDPLESWHEEKRSAWLYRVVAECEQGTPRAALFGELAQAADDQAEIWLRVLAADGAPPPAPFRPDLRTRVVASLTRLFT PRAMHGVLAAMKVRGMSLYTQHAPHATPSKRDDIGKRHRTGAAGNALRAGVFGVNDGLVSNAALIYGVAGAAQASEVILL TGVAGLLAGAFSMAAGEYVSMRSQREMFEYQIGLERDELEKYPAEEAAELALIYAAKGMPEGEAKRVADTLMENPERALD TLAREELGLNPDELGSPWTAALASFAAFSVGAAVPLLPFLLGAGNSLALSVAFTALGLFAVGASMSLFTGRRAPLSGLRM LAIGGGAGLATYFIGAWLGVTLG
Sequences:
>Translated_343_residues MSDPLESWHEEKRSAWLYRVVAECEQGTPRAALFGELAQAADDQAEIWLRVLAADGAPPPAPFRPDLRTRVVASLTRLFT PRAMHGVLAAMKVRGMSLYTQHAPHATPSKRDDIGKRHRTGAAGNALRAGVFGVNDGLVSNAALIYGVAGAAQASEVILL TGVAGLLAGAFSMAAGEYVSMRSQREMFEYQIGLERDELEKYPAEEAAELALIYAAKGMPEGEAKRVADTLMENPERALD TLAREELGLNPDELGSPWTAALASFAAFSVGAAVPLLPFLLGAGNSLALSVAFTALGLFAVGASMSLFTGRRAPLSGLRM LAIGGGAGLATYFIGAWLGVTLG >Mature_342_residues SDPLESWHEEKRSAWLYRVVAECEQGTPRAALFGELAQAADDQAEIWLRVLAADGAPPPAPFRPDLRTRVVASLTRLFTP RAMHGVLAAMKVRGMSLYTQHAPHATPSKRDDIGKRHRTGAAGNALRAGVFGVNDGLVSNAALIYGVAGAAQASEVILLT GVAGLLAGAFSMAAGEYVSMRSQREMFEYQIGLERDELEKYPAEEAAELALIYAAKGMPEGEAKRVADTLMENPERALDT LAREELGLNPDELGSPWTAALASFAAFSVGAAVPLLPFLLGAGNSLALSVAFTALGLFAVGASMSLFTGRRAPLSGLRML AIGGGAGLATYFIGAWLGVTLG
Specific function: Unknown
COG id: COG1814
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36127; Mature: 35996
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPLESWHEEKRSAWLYRVVAECEQGTPRAALFGELAQAADDQAEIWLRVLAADGAPPP CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC APFRPDLRTRVVASLTRLFTPRAMHGVLAAMKVRGMSLYTQHAPHATPSKRDDIGKRHRT CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHCC GAAGNALRAGVFGVNDGLVSNAALIYGVAGAAQASEVILLTGVAGLLAGAFSMAAGEYVS CCCCCHHHHCCCCCCCCHHHCCHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH MRSQREMFEYQIGLERDELEKYPAEEAAELALIYAAKGMPEGEAKRVADTLMENPERALD HHHHHHHHHHHCCCCHHHHHHCCHHHHHHEEHHHHHCCCCCHHHHHHHHHHHHCHHHHHH TLAREELGLNPDELGSPWTAALASFAAFSVGAAVPLLPFLLGAGNSLALSVAFTALGLFA HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH VGASMSLFTGRRAPLSGLRMLAIGGGAGLATYFIGAWLGVTLG HHCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDPLESWHEEKRSAWLYRVVAECEQGTPRAALFGELAQAADDQAEIWLRVLAADGAPPP CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC APFRPDLRTRVVASLTRLFTPRAMHGVLAAMKVRGMSLYTQHAPHATPSKRDDIGKRHRT CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHCC GAAGNALRAGVFGVNDGLVSNAALIYGVAGAAQASEVILLTGVAGLLAGAFSMAAGEYVS CCCCCHHHHCCCCCCCCHHHCCHHEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH MRSQREMFEYQIGLERDELEKYPAEEAAELALIYAAKGMPEGEAKRVADTLMENPERALD HHHHHHHHHHHCCCCHHHHHHCCHHHHHHEEHHHHHCCCCCHHHHHHHHHHHHCHHHHHH TLAREELGLNPDELGSPWTAALASFAAFSVGAAVPLLPFLLGAGNSLALSVAFTALGLFA HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH VGASMSLFTGRRAPLSGLRMLAIGGGAGLATYFIGAWLGVTLG HHCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA