Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316146

Identifier: 74316146

GI number: 74316146

Start: 137689

End: 138747

Strand: Reverse

Name: 74316146

Synonym: Tbd_0128

Alternate gene names: NA

Gene position: 138747-137689 (Counterclockwise)

Preceding gene: 74316147

Following gene: 74316125

Centisome position: 4.77

GC content: 66.29

Gene sequence:

>1059_bases
ATGAAGCGCCATACAGCCTTGTTCTGCACGCTCGCCCTGGCCGGCTTCATCAGCGGCTGCGAGCAGGAAAAGTCGCCGCC
CAAGCCCGAGACGGCACCGGCCGAAAAGACGACTGGGGGCGGCGAGCAGACCGGCTTCGCCGGCCAGCCGCCTGAACGGG
CGGCAGAGGCGAGCAAGCCCGCCGCGACTTTCGTTCCGCCGGACGAAAGCGAGATCCCGAACAACGAGTACGGCGAAACC
GTGCGCCAGGGCAAGGCGCTGTTCACGAACACCCAGCAATACGCCAAGAAATACGTCGGCAACGCGATGAACTGCAGCAA
CTGCCACCTCGACAACGGCCGCCGCGCCAATTCCGCCCCGCTCTGGGCGGCCTACGTGCTCTATCCGGCCTATCGCAAAA
AGACCGGCACGGTCGACACGATCCAGAGCCGCATCCAGGGCTGCTTCATGTACAGCATGGACGGCCGGCCGCCGGCGCTC
GACAGCAAGGAGATGACCGCGCTCGTGACCTACCACTACTGGATGTCGAAGGGCGCGCCGACCGGCGTCAAGCTGCCGGG
CCAGGGATTCATCAAAGTGCCAAAGCCCCCGCAGACGCCTGACCTCGCGCGCGGTGAGGCCGTCTACAAGGCCAACTGCG
TGATCTGCCACGGTGCCAACGGAGAAGGCATCAAGGTCGACGGCCAGCACGCCTTCCCGCCGCTCTGGGGCAAGGAGTCG
TTCAACTGGGGAGCCGGCATGCACCGCATTGACACGGCCGCCGGATTCATCAAGGCCAACATGCCCTACGGTCTTGGCGG
CACGCTCAGCGACCAGGAAGCCTGGGACGTCGCCCTCTTCATGAACAGCCACGAGCGTCCGCAGGACCCCCGCTTCAAGG
AGAGCCTTACACGCACGCGCGACACCTTCCACGACGAGAATTGCCTCTACGGACGGAGCCCCGAGGAGTTGGCCGCGTCG
CTCGCCAAAGGCGCCGCACCCGGCAGCCAGACCGGCGAAGCACAGGCCCGGCCGGGGGCCGGCCATTCGGAAGGCTATTC
GCCGGCGCAATCGCACTGA

Upstream 100 bases:

>100_bases
CGCAAAAGCTCATGAAGACGGTCGCGCAGAATCTCAGCGACGAAGACATCCGCGCCGTTGCCGCCTACCTGGCGACGCTC
GGCAACCGGGGGGCCAAGAA

Downstream 100 bases:

>100_bases
GGCACCCGGGGGTTCGCGACGCTACGGTCGCGTAGAACCCGGGGTTCGCTCCGGAAAAAAAGCCGCGCCCCTCGGCGCGG
CCTTTTTGAGGGACGTCCGG

Product: putative cytochrome C

Products: NA

Alternate protein names: Cytochrome C Family Protein; Cytochrome C; Gluconate 2-Dehydrogenase; Cytochrome C Signal Peptide Protein; C-Type Cytochrome Family Protein; C-Type Cytochrome; Class I Cytochrome C; Diheme-Containing SoxA-Like Protein; Thiosulfate Dehydrogenase; Cytochrome C Family; Cytochrome; Cytochrome C Family Protein Degenerate; Quinol-Cytochrome C Reductase Cytochrome C Subunit; CYTA Protein; Di-Heme Cytochrome C; OmpA/MotB

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKRHTALFCTLALAGFISGCEQEKSPPKPETAPAEKTTGGGEQTGFAGQPPERAAEASKPAATFVPPDESEIPNNEYGET
VRQGKALFTNTQQYAKKYVGNAMNCSNCHLDNGRRANSAPLWAAYVLYPAYRKKTGTVDTIQSRIQGCFMYSMDGRPPAL
DSKEMTALVTYHYWMSKGAPTGVKLPGQGFIKVPKPPQTPDLARGEAVYKANCVICHGANGEGIKVDGQHAFPPLWGKES
FNWGAGMHRIDTAAGFIKANMPYGLGGTLSDQEAWDVALFMNSHERPQDPRFKESLTRTRDTFHDENCLYGRSPEELAAS
LAKGAAPGSQTGEAQARPGAGHSEGYSPAQSH

Sequences:

>Translated_352_residues
MKRHTALFCTLALAGFISGCEQEKSPPKPETAPAEKTTGGGEQTGFAGQPPERAAEASKPAATFVPPDESEIPNNEYGET
VRQGKALFTNTQQYAKKYVGNAMNCSNCHLDNGRRANSAPLWAAYVLYPAYRKKTGTVDTIQSRIQGCFMYSMDGRPPAL
DSKEMTALVTYHYWMSKGAPTGVKLPGQGFIKVPKPPQTPDLARGEAVYKANCVICHGANGEGIKVDGQHAFPPLWGKES
FNWGAGMHRIDTAAGFIKANMPYGLGGTLSDQEAWDVALFMNSHERPQDPRFKESLTRTRDTFHDENCLYGRSPEELAAS
LAKGAAPGSQTGEAQARPGAGHSEGYSPAQSH
>Mature_352_residues
MKRHTALFCTLALAGFISGCEQEKSPPKPETAPAEKTTGGGEQTGFAGQPPERAAEASKPAATFVPPDESEIPNNEYGET
VRQGKALFTNTQQYAKKYVGNAMNCSNCHLDNGRRANSAPLWAAYVLYPAYRKKTGTVDTIQSRIQGCFMYSMDGRPPAL
DSKEMTALVTYHYWMSKGAPTGVKLPGQGFIKVPKPPQTPDLARGEAVYKANCVICHGANGEGIKVDGQHAFPPLWGKES
FNWGAGMHRIDTAAGFIKANMPYGLGGTLSDQEAWDVALFMNSHERPQDPRFKESLTRTRDTFHDENCLYGRSPEELAAS
LAKGAAPGSQTGEAQARPGAGHSEGYSPAQSH

Specific function: Unknown

COG id: COG3258

COG function: function code C; Cytochrome c

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38003; Mature: 38003

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHTALFCTLALAGFISGCEQEKSPPKPETAPAEKTTGGGEQTGFAGQPPERAAEASKP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
AATFVPPDESEIPNNEYGETVRQGKALFTNTQQYAKKYVGNAMNCSNCHLDNGRRANSAP
CEECCCCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LWAAYVLYPAYRKKTGTVDTIQSRIQGCFMYSMDGRPPALDSKEMTALVTYHYWMSKGAP
CEEHHHHHHHHHCCCCCHHHHHHHHCEEEEEECCCCCCCCCCCHHEEEEEEHHHHHCCCC
TGVKLPGQGFIKVPKPPQTPDLARGEAVYKANCVICHGANGEGIKVDGQHAFPPLWGKES
CCEECCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCC
FNWGAGMHRIDTAAGFIKANMPYGLGGTLSDQEAWDVALFMNSHERPQDPRFKESLTRTR
CCCCCCCHHHHHHHCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
DTFHDENCLYGRSPEELAASLAKGAAPGSQTGEAQARPGAGHSEGYSPAQSH
HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRHTALFCTLALAGFISGCEQEKSPPKPETAPAEKTTGGGEQTGFAGQPPERAAEASKP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
AATFVPPDESEIPNNEYGETVRQGKALFTNTQQYAKKYVGNAMNCSNCHLDNGRRANSAP
CEECCCCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LWAAYVLYPAYRKKTGTVDTIQSRIQGCFMYSMDGRPPALDSKEMTALVTYHYWMSKGAP
CEEHHHHHHHHHCCCCCHHHHHHHHCEEEEEECCCCCCCCCCCHHEEEEEEHHHHHCCCC
TGVKLPGQGFIKVPKPPQTPDLARGEAVYKANCVICHGANGEGIKVDGQHAFPPLWGKES
CCEECCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCC
FNWGAGMHRIDTAAGFIKANMPYGLGGTLSDQEAWDVALFMNSHERPQDPRFKESLTRTR
CCCCCCCHHHHHHHCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
DTFHDENCLYGRSPEELAASLAKGAAPGSQTGEAQARPGAGHSEGYSPAQSH
HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA